Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0209
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0163 + 26400486-26400621,26401477-26401646,26402623-264027...    57   1e-08
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063...    52   4e-07
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     32   0.38 
01_07_0383 - 43195095-43195322,43195408-43195638,43196134-431964...    29   3.5  
01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091...    28   8.1  

>02_05_0163 +
           26400486-26400621,26401477-26401646,26402623-26402713,
           26402822-26402873,26403462-26403565,26403648-26403724,
           26403890-26404069
          Length = 269

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +3

Query: 3   ELIFTSRIVSGKEAKALGIVNHVVAQDTANKAAFEKALSIAREIIPNAPIALRCAKQAIS 182
           E+IFT R  +  EA  +G+ N+ V    A+    EKAL +AREI    P+ +R AK+AI 
Sbjct: 168 EMIFTGRRCNATEAVMMGLANYCVPAGEAH----EKALELAREIAQKGPLGIRMAKKAID 223

Query: 183 EGIQLS-IKDGYEIEQKCYE 239
           +G+Q + +     +E +CYE
Sbjct: 224 QGMQAADMPSALAVEGECYE 243



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 257 DRQEGMISFMEKRKPVYEG 313
           DR EG+ +F E+RKPVY G
Sbjct: 250 DRLEGLAAFAERRKPVYSG 268


>02_05_0164 +
           26405052-26405208,26405304-26405473,26406278-26406352,
           26406570-26406660,26406768-26406848,26407192-26407353,
           26407425-26407501,26407670-26407846
          Length = 329

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 23/62 (37%), Positives = 42/62 (67%)
 Frame = +3

Query: 54  GIVNHVVAQDTANKAAFEKALSIAREIIPNAPIALRCAKQAISEGIQLSIKDGYEIEQKC 233
           G+VN+ V    A    +++AL +A+EI    P+A+R AK+AI++G+++ +  G  +E++C
Sbjct: 246 GVVNYCVPAGEA----YKRALELAQEINQKGPLAIRMAKKAINQGMEVDLSAGLAVEEEC 301

Query: 234 YE 239
           YE
Sbjct: 302 YE 303



 Score = 32.3 bits (70), Expect = 0.38
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 257 DRQEGMISFMEKRKPVYEG 313
           DR EG+ +F EKRKPVY G
Sbjct: 310 DRLEGLAAFAEKRKPVYTG 328


>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 20/76 (26%), Positives = 38/76 (50%)
 Frame = +3

Query: 3   ELIFTSRIVSGKEAKALGIVNHVVAQDTANKAAFEKALSIAREIIPNAPIALRCAKQAIS 182
           E+  T   ++ + A+  G+VNH+V  DT       KA+ +   I  N    +   K  I+
Sbjct: 165 EVSLTCMPITAEMAEKWGLVNHIV-DDT---QVLSKAIEVCEAIARNNRNLVVLYKSVIN 220

Query: 183 EGIQLSIKDGYEIEQK 230
           +G+QL ++    +E++
Sbjct: 221 DGLQLDLEHARALEKE 236


>01_07_0383 - 43195095-43195322,43195408-43195638,43196134-43196454,
            43196512-43196589,43196664-43197727,43197813-43198503,
            43198743-43199541,43200010-43200158,43200159-43200286,
            43200389-43200494,43200835-43200843,43201332-43201821,
            43201896-43202554,43203759-43203851,43204044-43204196,
            43205092-43205194,43205376-43205467,43206229-43206306,
            43206987-43207049,43207339-43207512
          Length = 1902

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
 Frame = +3

Query: 9    IFTSRIVSGKEAKALGIVNHVVAQDTANKAAFEKALS----IAREIIPNAPIALRCAKQA 176
            +F    V+ K  K L  V   + +  + K    +A      + + I+    +A+ C   +
Sbjct: 1196 LFIGSTVNRKCVKTLPFVMSTIIKPLSGKLKLNEASCYTDLVGQNILSWLDVAISCLSSS 1255

Query: 177  ISEGIQLSIKDGYEIEQKCYEINIPTKTDR 266
              E +Q  I D  ++   C+ +NI   T +
Sbjct: 1256 PREVLQQDIVDWMQVVLSCFPLNITCGTQK 1285


>01_06_1312 -
           36205549-36206649,36207558-36207883,36209083-36209198,
           36210472-36211577
          Length = 882

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 275 SCLPVCLSWNIYFV--AFLFYLITIL 204
           SC P+ L W I F+  A+LF+LI+ L
Sbjct: 637 SCEPLALLWTIAFLISAYLFFLISTL 662


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,480,189
Number of Sequences: 37544
Number of extensions: 256514
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)