Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0209
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016)          30   2.1  
SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_25155| Best HMM Match : HCV_NS3 (HMM E-Value=9.2)                   28   8.3  
SB_5105| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-09)                  28   8.3  
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 230 MLRNKYSN*DRQEGMISFMEKRKPVYE 310
           M    ++  DR+EGM +F+EKRKP ++
Sbjct: 283 MFHTTFALDDRKEGMTAFIEKRKPEFK 309


>SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1525

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 47  SIRHSESCGRTRHCK-QSSL*EGLEHCTRNHPE 142
           S+ HS SCG   +C+    L    E   RNHPE
Sbjct: 228 SVYHSTSCGEVENCRLLEHLQSNTESFLRNHPE 260


>SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016)
          Length = 999

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 47  SIRHSESCGRTRHCK-QSSL*EGLEHCTRNHPE 142
           S+ HS SCG   +C+    L    E   RNHPE
Sbjct: 434 SVYHSTSCGEVENCRLLEHLQSNTESFLRNHPE 466


>SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 116 EHCTRNHPECPHSPPL 163
           EHC + +P CPH P +
Sbjct: 434 EHCAKTYPICPHGPDI 449


>SB_25155| Best HMM Match : HCV_NS3 (HMM E-Value=9.2)
          Length = 263

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 260 CLSWNIYFVAFLFYLITILDTQ 195
           CLSW  +++ F F +I ++D Q
Sbjct: 85  CLSWRHFYLVFKFDIIALIDKQ 106


>SB_5105| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-09)
          Length = 438

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 257 LSWNIYFVAFLFYLITILDTQLYAFT 180
           + W IYF+  L YL+  L T   A+T
Sbjct: 166 IPWKIYFILMLIYLLLPLATMSAAYT 191


>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 336 RNLSILIQTLQFVYMLTIDTILNCF 410
           + L  ++QT ++V  + +DT+L+CF
Sbjct: 75  KRLRSVLQTFRYVVAMMLDTVLSCF 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,098,559
Number of Sequences: 59808
Number of extensions: 353421
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)