Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0209
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar t...    63   1e-10
At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro...    36   0.019
At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family pr...    33   0.18 
At1g50750.1 68414.m05707 expressed protein                             28   6.8  
At5g11610.2 68418.m01356 exostosin family protein contains Pfam ...    27   9.0  
At5g11610.1 68418.m01355 exostosin family protein contains Pfam ...    27   9.0  

>At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar to
           AU-binding protein/Enoyl-CoA hydratase [Homo sapiens]
           GI:780241, [Mus musculus]GI:6840920; contains Pfam
           profile PF00378 enoyl-CoA hydratase/isomerase family
           protein
          Length = 229

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 34/79 (43%), Positives = 51/79 (64%)
 Frame = +3

Query: 3   ELIFTSRIVSGKEAKALGIVNHVVAQDTANKAAFEKALSIAREIIPNAPIALRCAKQAIS 182
           ELIFT R +   EA   G+VN  V   TA +A  EKA+ +A++I    P+A++ AK+AI 
Sbjct: 129 ELIFTGRKIDAIEAANKGLVNICV---TAGEA-HEKAIEMAQQINEKGPLAIKMAKKAID 184

Query: 183 EGIQLSIKDGYEIEQKCYE 239
           EGI+ ++  G E+E+ CY+
Sbjct: 185 EGIETNMASGLEVEEMCYQ 203



 Score = 31.5 bits (68), Expect = 0.55
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 257 DRQEGMISFMEKRKPVYEGH 316
           DR EG+ +F EKRKP+Y G+
Sbjct: 210 DRLEGLAAFAEKRKPLYTGN 229


>At1g60550.1 68414.m06816 naphthoate synthase, putative /
           dihydroxynaphthoic acid synthetase, putative / DHNA
           synthetase, putative contains similarity to MENB from
           Escherichia coli [SP|P27290], Bacillus subtilis
           [SP|P23966]; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 337

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = +3

Query: 3   ELIFTSRIVSGKEAKALGIVNHVVAQDTANKAAFEKALSIAREIIPNAPIALRCAKQAIS 182
           E+ F +R  +  EA+ +G++N VV  +   K    + +   REI+ N+P A+R  K A++
Sbjct: 234 EMWFMTRFYTASEAEKMGLINTVVPLEDLEK----ETVKWCREILRNSPTAIRVLKAALN 289


>At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family
           protein similar to Delta 3,5-delta2,4-dienoyl-CoA
           isomerase, mitochondrial (ECH1) from Rattus norvegicus
           [SP|Q62651], from Homo sapiens [SP|Q13011]; contains
           Pfam profile PF00378 enoyl-CoA hydratase/isomerase
           family protein
          Length = 278

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +3

Query: 3   ELIFTSRIVSGKEAKALGIVNHVVAQDTANKAAFEKAL-SIAREIIPNAPIALRCAKQAI 179
           EL  T+R  SG EAK LG+V+ V      +K+  +  + +IA  I   +P+A+   K  +
Sbjct: 177 ELALTARRFSGSEAKDLGLVSKVF----GSKSELDNGVTTIAEGIGGKSPLAVTGTKAVL 232

Query: 180 SEGIQLSIKDGYE 218
               ++S++ G +
Sbjct: 233 LRSREVSVEQGLD 245


>At1g50750.1 68414.m05707 expressed protein
          Length = 816

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 30  SGKEA-KALGIVNHVVAQDTANKAAFEKALSIAREIIPNAPIALR 161
           SG++A + LG ++ V A D  +   F+K  SI  EI+P + IA R
Sbjct: 529 SGRDASEPLGKISRVEA-DNNDLGTFQKLASIRDEIVPPSEIAHR 572


>At5g11610.2 68418.m01356 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 453

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 645 KSRIM*IYFSNNPLSICLYLHDTH*TSPVVTTIGFYD*I*AVPSMSYNR 499
           K+ +  I FS+  L   LY+HD+H  + +V  +G Y  + A    S+NR
Sbjct: 267 KAHLFYIPFSSRILQQKLYVHDSHSRNNLVKYLGNYIDLIASNYPSWNR 315


>At5g11610.1 68418.m01355 exostosin family protein contains Pfam
           domain, PF03016: Exostosin family
          Length = 546

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 645 KSRIM*IYFSNNPLSICLYLHDTH*TSPVVTTIGFYD*I*AVPSMSYNR 499
           K+ +  I FS+  L   LY+HD+H  + +V  +G Y  + A    S+NR
Sbjct: 267 KAHLFYIPFSSRILQQKLYVHDSHSRNNLVKYLGNYIDLIASNYPSWNR 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,574,908
Number of Sequences: 28952
Number of extensions: 234364
Number of successful extensions: 515
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)