Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0208
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 50 4e-07
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 30 0.34
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 27 4.2
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 4.2
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 5.5
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 26 7.3
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 7.3
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.7
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ... 25 9.7
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 50.0 bits (114), Expect = 4e-07
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = +3
Query: 258 HEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEE 437
HEE ER A+V + RE + +H+ +++ E S +L +E D L+ +E
Sbjct: 13 HEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLVSHESSDRLKDQE 72
Query: 438 ISALSGPHEFQEFYSRLKQIKEFQE 512
++ ++ + EFY L +I+EF +
Sbjct: 73 VARINADDDLTEFYKSLGEIQEFHK 97
Score = 41.1 bits (92), Expect = 2e-04
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 635 GKYLDLHSCYEKYINLKXIEKVDYITYL 718
G+++DL+ CYE+YINL ++ + Y+ YL
Sbjct: 134 GRFMDLNECYEEYINLSNVQHISYLEYL 161
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 30.3 bits (65), Expect = 0.34
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Frame = +3
Query: 228 NGNNFRATK-YHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKEL 404
N +NF +++ HEE +D+ + E++ K+ +E +++ + D + L+EL
Sbjct: 170 NYDNFLSSQTVHEENTAALDSEIDELM-KQINEKE-----EKIEEISDETDKLQKLLREL 223
Query: 405 YEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFQENIQMKYLYPCL*NLKSWANQRE 578
E+K+ + EE QEFY+ L Q + + + ++ Y C NL+ N R+
Sbjct: 224 DEEKEKVYAEE----------QEFYNNLNQFQ--IKKLSLERQYDCA-NLEFEHNSRK 268
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 459 HEFQEFYSRLKQ-IKEFQENIQMKYLY 536
HE EFY RLK+ IK+ Q+ I + LY
Sbjct: 35 HEPPEFYQRLKKLIKKAQKRIFLSTLY 61
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 300 ILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPH--EFQE 473
I++ + RE +N R + + +EA +E E+K S++SG H EF E
Sbjct: 184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLE 243
Query: 474 FYSRLKQ 494
+ LK+
Sbjct: 244 YVESLKK 250
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 5.5
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = -1
Query: 653 VGP--NTFP*PFFISE------LDRNCVI-LSRIFPLICPTLQILQTWVQIFHLDVFLKL 501
+GP NT P P F+ + L R C + L+ + P +L+ ++ W++ L L
Sbjct: 3604 MGPLFNTIPFPLFLEKDESFDCLVRRCQLTLASMIPYHQTSLREIKKWLRRSELFNVLFT 3663
Query: 500 FNLLKSRIELLELMWT 453
+NL S I+ E W+
Sbjct: 3664 YNLHPSVIKQCEFPWS 3679
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +3
Query: 390 RLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFQENIQMKYLYPC 542
++KE Y+ + + + E +YS + + EF+E Y YPC
Sbjct: 48 QVKEAYQVLSSEKDRQQYQIKQEEESSHYYS-IVDLSEFEELDNGSYYYPC 97
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 396 KELYEDKDGLRKEEISALSGPHEFQEFYSR 485
KE +++D L+KEE + P EF+ F R
Sbjct: 314 KEGLDEQDNLQKEESVHIDVPAEFEAFDER 343
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 285 AMVKEILHKKTGHRETINADHRLKN 359
++ K LHK T H T + H KN
Sbjct: 22 SLYKRRLHKSTSHSSTATSSHYSKN 46
>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 596 VILSRIFPLICPTLQILQTWVQIFHLDVFLKLFNLLKSRIELL 468
+IL+R +I PTL IL + IFH + K + L I+ L
Sbjct: 1 MILNRRIQVILPTLLILSFIIWIFHSVMVDKDWRLFMPEIKSL 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,346
Number of Sequences: 5004
Number of extensions: 63708
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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