Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0208
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0922 - 28835983-28836129,28836328-28836474,28836782-288369...    33   0.27 
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638...    31   1.1  
01_06_1841 + 40267902-40268485,40269290-40270421                       31   1.1  
08_02_0077 - 11979497-11979654,11980012-11982178                       31   1.4  
04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381     31   1.4  
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25...    29   4.4  
03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529...    28   7.7  

>03_05_0922 -
           28835983-28836129,28836328-28836474,28836782-28836910,
           28837201-28837278,28841639-28841812
          Length = 224

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +3

Query: 258 HEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEAS-----IRLKELYEDKDG 422
           HE+ ER     V+E+  +    R+ +   HR++++ D  I  S     +R KE  E K  
Sbjct: 13  HEDMERLERLAVRELQREPANARDRLYQSHRVRHMLDLVISTSGKLIIVRTKENAEKKLT 72

Query: 423 LRKEEISALSGPHEFQ 470
           L  EE+ A     E Q
Sbjct: 73  LTYEEMEAEREEEEVQ 88


>01_07_0353 +
           42962769-42962972,42963062-42963138,42963571-42963817,
           42963907-42964476,42964998-42965171,42965514-42965640,
           42965719-42965828,42966707-42966907,42966999-42967966,
           42968110-42968358,42968760-42969105
          Length = 1090

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 602 NCV-ILSRIFPLICPTLQILQTWVQIFHLDVFLK 504
           NC+ ++S+ F  +C TL  ++ W QI  +D+ L+
Sbjct: 203 NCLPLISKHFQRLCETLPDIEEWAQILLIDIILR 236


>01_06_1841 + 40267902-40268485,40269290-40270421
          Length = 571

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 216 ITFKNGNNFRATKYHEERERTMDAMVKEILHKKTGHRETINADHRLKNL 362
           I  + G++  A       +R +DAMVKEI H K G +  +   ++L+ L
Sbjct: 227 INIRGGHHMAAASQWHMAQREIDAMVKEI-HSKAGRQHALVWSYKLRLL 274


>08_02_0077 - 11979497-11979654,11980012-11982178
          Length = 774

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 309 KKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGP 458
           KK  H       H  +N H+RY E S+ +KE  +D   +  E+I     P
Sbjct: 286 KKQKHSAMEPVHHAEENRHERYTETSVHVKEAMKDLKLVFGEDIRCAQMP 335


>04_04_0252 - 23935615-23936159,23936606-23936745,23936846-23937381
          Length = 406

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/60 (31%), Positives = 34/60 (56%)
 Frame = +3

Query: 330 TINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFQ 509
           T+  D   K LH ++   S +L EL  + DGLRKE   +L    E+++  + +KQ+++ +
Sbjct: 141 TVEMDKVTKELH-KFSGDSKKLPELLTELDGLRKEH-QSLRSAFEYEK-NTNIKQVEQMR 197


>03_01_0027 -
           250837-250877,250972-252909,253733-253805,254476-254555,
           255336-255595,255721-255785,256747-256839
          Length = 849

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +3

Query: 261 EERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKE-LYEDKDGLRKEE 437
           E++ +  D    ++  +   H +T    HR KNLH +  E  I+L E L     GL + E
Sbjct: 708 EQKRQEADNAHAQLQDECNRHTQTEADLHRFKNLHSQLEEEVIKLTENLDRSTKGLEELE 767

Query: 438 ISALSGPHEFQEFYSRLKQIKEFQENIQMK 527
            + L   +  +E  S +  +   ++ + ++
Sbjct: 768 NAKLDLENTSRELKSTILDLNSEKDAVLLQ 797


>03_02_0055 -
           5295466-5295476,5295519-5296635,5296760-5296855,
           5297097-5297263,5297345-5297519,5297521-5297699,
           5298004-5298109
          Length = 616

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
 Frame = +3

Query: 264 ERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASI---RLKELYED------K 416
           E +  M   +K+I+ +  G  + I+ D   +NLH  + E  +      E++ D      K
Sbjct: 361 ELKEAMAKRLKDIVTRYAG--KVIHWDVVNENLHFNFFEGKLGKDASAEIFRDVAKLDSK 418

Query: 417 DGLRKEEISALSGPHEFQ----EFYSRLKQIKEFQENIQMKY 530
             L   E + +  P++      ++ ++LKQI+EF  N  +KY
Sbjct: 419 PILFMNEFNTIEEPNDAAPLPTKYVAKLKQIREFPGNADLKY 460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,964,520
Number of Sequences: 37544
Number of extensions: 336108
Number of successful extensions: 839
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)