Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0208
(812 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11) 30 1.9
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 30 2.6
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 30 2.6
SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_26151| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_59156| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 29 4.5
SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97) 29 4.5
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_34646| Best HMM Match : DUF1233 (HMM E-Value=3) 29 5.9
SB_9880| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 29 5.9
SB_50076| Best HMM Match : Filament (HMM E-Value=0.15) 29 5.9
SB_43160| Best HMM Match : Occludin_ELL (HMM E-Value=8.4) 29 5.9
SB_39078| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_11828| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_6394| Best HMM Match : FlaC_arch (HMM E-Value=0.77) 29 5.9
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 33.1 bits (72), Expect = 0.28
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 261 EERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYED-KDG 422
EE E + E+ H + HR+ + K +++R ++ +R+ +LYE+ +DG
Sbjct: 14 EEEEDDQGQRMVELKHNQPDHRDAVQKKTFTKWVNNRLLKVGVRILDLYEELRDG 68
>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
Length = 1552
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 378 EASIRLKELYEDKDGLRKEEISALSGPH--EFQEFYSRLKQIKEFQENIQMKYLYPCL*N 551
+ I LK+L +D+ + K+E S+ H E+QE R ++ + ++ Y YP
Sbjct: 1137 DEDIPLKDL-DDEPDMMKDESSSAESVHDLEWQEELDRPEEEHQGEDENSTSYRYPTPKI 1195
Query: 552 LKSWANQRENPAEDYTVP 605
+ S +EN D +P
Sbjct: 1196 VYSAEESKENRKSDIIIP 1213
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 30.3 bits (65), Expect = 1.9
Identities = 28/89 (31%), Positives = 42/89 (47%)
Frame = +3
Query: 252 KYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRK 431
KY R T++ V +LH+ + E N R K+ + +A RLKE + G R
Sbjct: 284 KYKTARISTLEKEVA-VLHQ--ANAELKNKADRFKHTEEEKNKAIERLKEATISEKGKRN 340
Query: 432 EEISALSGPHEFQEFYSRLKQIKEFQENI 518
EI+ L+ E E K+ KE QE++
Sbjct: 341 NEITELNIKLEKLE-----KEFKELQEDL 364
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +3
Query: 363 HDRYIEASIRLKELYEDKDGL--RKEEISALSGPHEFQEFYSRLKQIKEFQENIQMK 527
H++ +E S RL+ + DKD E +FQ F ++L+Q+++ + ++ K
Sbjct: 687 HEKLVETSARLQRMIPDKDAFINTLRESRTEEYQAKFQAFQAKLEQVRKERLEVRRK 743
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 309 KKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRL 488
K G+ TI +H+L+ + + A LK + + LRK+ + E + + S +
Sbjct: 235 KSDGYSTTIPVEHKLRYIWRQLTRAESSLKSSLDSVEQLRKQHAEEMI---EVENYVSHI 291
Query: 489 KQIKEFQE 512
+Q+ + +E
Sbjct: 292 RQLSDERE 299
>SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/95 (25%), Positives = 39/95 (41%)
Frame = +3
Query: 261 EERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEI 440
EE+ + K E RLK + + I + L E ++++ L +E
Sbjct: 353 EEKNAVAKELEKREKDLMEAEEEQNKLQERLKAVESKIIVGGVNLLEKAKEQELLLEESA 412
Query: 441 SALSGPHEFQEFYSRLKQIKEFQENIQMKYLYPCL 545
L+ E QE +L + KE QE I ++ Y L
Sbjct: 413 KELAERRERQENLQKLIKEKE-QERIDIEEKYASL 446
>SB_26151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = +3
Query: 354 KNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFQENIQ 521
KNL + AS++LK+ + +++E + + G EFQ+ ++ KQ+ E + +Q
Sbjct: 177 KNLENEV--ASLKLKQ-----ETIKEEVVEEIEGDEEFQKLQNKYKQVVEEKNTLQ 225
>SB_59156| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 339
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 333 INADHRLKNLHDRYIEASIRLKELYEDKDGLRKE 434
I D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 IPRDSRIEELENQLSELKHRLADVVKERDGMRKE 70
>SB_5674| Best HMM Match : FlaC_arch (HMM E-Value=0.97)
Length = 273
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 342 DHRLKNLHDRYIEASIRLKELYEDKDGLRKE 434
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 15 DSRIEGLENQLSELKHRLSDVVKERDGMRKE 45
>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1352
Score = 29.1 bits (62), Expect = 4.5
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Frame = +3
Query: 213 SITFKNGNNFRATKYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEA--S 386
++ F G + T H E+ER M M K+ H K ++K + + +E S
Sbjct: 844 NVPFVMGKTYITTD-HAEKERLMAEMQKKAAHLKKKQEAQAALVQKIKMMESKLLEGGKS 902
Query: 387 IRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFQENIQMKYLY 536
I K +++D RK + A H+ QE K + ++ I++K Y
Sbjct: 903 IVDKTSEQERDLERKRQEIA---EHKRQEREMLQKLEAKDEDTIEIKDTY 949
>SB_58659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 342 DHRLKNLHDRYIEASIRLKELYEDKDGLRKE 434
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_34646| Best HMM Match : DUF1233 (HMM E-Value=3)
Length = 209
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 342 DHRLKNLHDRYIEASIRLKELYEDKDGLRKE 434
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_9880| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 272
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 342 DHRLKNLHDRYIEASIRLKELYEDKDGLRKE 434
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_50076| Best HMM Match : Filament (HMM E-Value=0.15)
Length = 380
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 354 KNLHDRYIEASIRLKELYEDKDGLRKE 434
+ LH+ YIE +L+EL++D + +KE
Sbjct: 133 EELHNDYIEMQRKLEELWQDNEKYKKE 159
>SB_43160| Best HMM Match : Occludin_ELL (HMM E-Value=8.4)
Length = 116
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 342 DHRLKNLHDRYIEASIRLKELYEDKDGLRKE 434
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_39078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 342 DHRLKNLHDRYIEASIRLKELYEDKDGLRKE 434
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 15 DSRIEELENQLSELKHRLADVVKERDGMRKE 45
>SB_11828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 342 DHRLKNLHDRYIEASIRLKELYEDKDGLRKE 434
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_6394| Best HMM Match : FlaC_arch (HMM E-Value=0.77)
Length = 149
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 342 DHRLKNLHDRYIEASIRLKELYEDKDGLRKE 434
D R++ L ++ E RL ++ +++DG+RKE
Sbjct: 37 DSRIEELENQLSELKHRLADVVKERDGMRKE 67
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 657 ECRSKYFPIALLHQ*TR---QELCNPQQDFPFDLPNSSNST 544
EC+S Y P +L +R ++ + Q D P D P+SS+ T
Sbjct: 1386 ECKSAYDPAMMLDYESRIVSEDNLDKQTDCPMDAPDSSDPT 1426
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,717,484
Number of Sequences: 59808
Number of extensions: 412905
Number of successful extensions: 910
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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