Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0208
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical pr...    94   9e-20
AC006713-4|AAK68404.1|  321|Caenorhabditis elegans Hypothetical ...    31   1.3  
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    30   1.7  
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    30   1.7  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    30   1.7  
Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    29   4.0  
Z54237-1|CAA90987.2|  445|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC024790-1|AAK84609.1|  315|Caenorhabditis elegans Hypothetical ...    28   6.9  
U23454-4|AAC46517.1|  217|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical
           protein T13H5.4 protein.
          Length = 500

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 48/123 (39%), Positives = 69/123 (56%)
 Frame = +3

Query: 258 HEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEE 437
           HEERER +D  VKE + +K  H+  +N++ R+K   DRY   S  L + Y+D+DG +  E
Sbjct: 12  HEERERLIDITVKEKIAEKLTHKAKVNSEQRVKTFVDRYYSVSAELAKFYKDEDGSKSME 71

Query: 438 ISALSGPHEFQEFYSRLKQIKEFQENIQMKYLYPCL*NLKSWANQRENPAEDYTVPVEFT 617
           + ++SGP+EF EFYSRLK IK+       +   P     +    +  NP       VEF+
Sbjct: 72  MDSVSGPNEFAEFYSRLKVIKDAHRRNPDELAEPLTVEFQKINEEIINPERAEPDMVEFS 131

Query: 618 DEE 626
           DEE
Sbjct: 132 DEE 134



 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 27/74 (36%), Positives = 47/74 (63%)
 Frame = +2

Query: 509 RKHPNEISVPMSVEFEELGKSKGKSC*GLHSSCRVH**RRAMGKYLDLHSCYEKYINLKX 688
           R++P+E++ P++VEF+++ +                    A G++LDLH+ Y+K+INLK 
Sbjct: 96  RRNPDELAEPLTVEFQKINEEIINPERAEPDMVEFSD-EEAYGRFLDLHAQYDKFINLKN 154

Query: 689 IEKVDYITYLSIFD 730
           I++VDY+TYL  F+
Sbjct: 155 IKRVDYMTYLLNFE 168


>AC006713-4|AAK68404.1|  321|Caenorhabditis elegans Hypothetical
           protein Y119D3A.1 protein.
          Length = 321

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 339 ADHRLKNLHDRYIEASIRL-KELYEDKDGLRKEEISALSGPHEFQEFYSR 485
           A +    L+   +E S +L   LYED +    EE++  SG  EF++FY +
Sbjct: 109 AKNNATELYFSSLEKSNKLGASLYEDSENAGAEEMNISSGTIEFKDFYHK 158


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +3

Query: 261 EERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEI 440
           ++ E+T+  +  EI  +K  H E  + ++R+K    R    S  L E  +  D LRK+ I
Sbjct: 201 DDLEKTVQNLKVEI--EKLKH-ERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLI 257

Query: 441 SALSGPHEFQEFYSRLK 491
            A    H  Q++  +L+
Sbjct: 258 QAKDDKHIIQQYEVKLQ 274


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +3

Query: 261 EERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEI 440
           ++ E+T+  +  EI  +K  H E  + ++R+K    R    S  L E  +  D LRK+ I
Sbjct: 201 DDLEKTVQNLKVEI--EKLKH-ERFDFENRMKIAEKRVESLSSNLSESKQQGDMLRKQLI 257

Query: 441 SALSGPHEFQEFYSRLK 491
            A    H  Q++  +L+
Sbjct: 258 QAKDDKHIIQQYEVKLQ 274


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = +3

Query: 252  KYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRK 431
            +Y +     +D  V+ I   +  H+E    D   ++  ++  +  ++LKEL  +   L+ 
Sbjct: 1166 RYKKLLREKIDEGVQIIEKVEIVHQEVEIPD---RSTEEQLRKTEVKLKELESEMRKLKA 1222

Query: 432  EEISALSGPHEFQEFYSRLKQIKEF-QENIQMKYLYP 539
            +    +    E  +   R+++ KEF  E +Q ++ YP
Sbjct: 1223 KRAEIVKNDDEQDDVSERIERFKEFLDEEVQTEWEYP 1259


>Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
 Frame = +3

Query: 249 TKYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRL---KELYEDKD 419
           T YH+ RE+++ A+ +++      H+E +    R++   D  ++  I L   KE  E K 
Sbjct: 46  TDYHDSREKSLVALTEKL------HQEFMEDQERVR--RDLLVQFKIELDQTKEELEKKH 97

Query: 420 GLR-KEEISALSGPHEFQEFYSRLKQ 494
               KEEI  LS  H+ +   ++ KQ
Sbjct: 98  AENLKEEIEKLSEKHQRELAVAKKKQ 123


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
 Frame = +3

Query: 252  KYHEERERTMDAM--VKEILHKKTGHRETI-----NADHRLKNLHDRYIEASIRLKELYE 410
            K ++ER + M+ +  ++E L ++   R+ +     N D RL+NL +R +E      +L +
Sbjct: 939  KNNDERRKQMETVRDLEEQLEQEEQARQKLLLDKTNVDQRLRNLEERLVELQDAYDKLLK 998

Query: 411  DKDGLRKEEISALS 452
            +K  L +E++  L+
Sbjct: 999  EK-RLLEEKVEGLT 1011


>Z54237-1|CAA90987.2|  445|Caenorhabditis elegans Hypothetical
           protein T11B7.1 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 177 YCILQGD*HKTISITFKNGNNFRATKYHEERERTMDAMVKEILHKKTGHRETINADHRLK 356
           Y  LQ D    I   FK   N ++ + HE  +      + E+  +    +E ++ D +LK
Sbjct: 132 YADLQNDFEVQIE-KFKKLQNLKSIQNHENSKNVNPLTLDELTEQLKQFKEELSIDQKLK 190

Query: 357 NL 362
           N+
Sbjct: 191 NI 192


>AC024790-1|AAK84609.1|  315|Caenorhabditis elegans Hypothetical
           protein Y47D7A.3 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +3

Query: 351 LKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFQENIQMKY 530
           L N  DRYI+  I +    E +  LR  EIS L  P       + +K  K FQ  +  K 
Sbjct: 220 LSNARDRYIQCMINVSSCSEVQSALRLAEIS-LIFPSITVGKLNGIKNSKSFQNFMTPKI 278

Query: 531 L 533
           L
Sbjct: 279 L 279


>U23454-4|AAC46517.1|  217|Caenorhabditis elegans Hypothetical
           protein C10A4.3 protein.
          Length = 217

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 597 CNPQQDFPFDLPNSSNSTDMGTDISF 520
           CNP Q+FP+ + N  +     T I+F
Sbjct: 46  CNPHQEFPYQILNHLSQISFFTKINF 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,774,430
Number of Sequences: 27780
Number of extensions: 339308
Number of successful extensions: 891
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)