Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0208
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   1.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.5  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 462 EFQEFYSRLKQIKEFQENIQMKYLYPCL 545
           E  E +    +   FQ+ ++MKYL  CL
Sbjct: 377 ELDEIFGDSDRPATFQDTLEMKYLERCL 404


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 263 GKGKNHGRNGQRNSSQKNWASGDYK 337
           G+G N GR G  N ++    + DY+
Sbjct: 93  GRGGNRGRTGFNNKNKDGDDNNDYE 117



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 263 GKGKNHGRNGQRNSSQKNWASG 328
           GKG+ HG+ G R        +G
Sbjct: 81  GKGRGHGKGGSRGRGGNRGRTG 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,634
Number of Sequences: 438
Number of extensions: 4225
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)