Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0208
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06160.1 68418.m00687 splicing factor-related contains some s...    58   5e-09
At3g11560.3 68416.m01412 expressed protein                             29   2.8  
At3g11560.2 68416.m01411 expressed protein                             29   2.8  
At3g11560.1 68416.m01410 expressed protein                             29   2.8  
At5g49520.1 68418.m06128 WRKY family transcription factor contai...    29   3.7  
At1g78840.1 68414.m09190 F-box family protein contains F-box dom...    29   3.7  

>At5g06160.1 68418.m00687 splicing factor-related contains some
           similarity to splicing factor SP:Q12874 from [Homo
           sapiens]
          Length = 504

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
 Frame = +3

Query: 258 HEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEE 437
           HEE ER    +V+++  +    ++ +   HR++++ +  +  + +L E YEDKDG   +E
Sbjct: 13  HEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVETYEDKDGAWDDE 72

Query: 438 ISAL-----SGPHEFQEFYSRLKQIKEFQE 512
           I+AL     +G + F EFY RLK+I+E+ +
Sbjct: 73  IAALGGQTATGTNVFSEFYDRLKEIREYHK 102



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +2

Query: 635 GKYLDLHSCYEKYINLKXIEKVDYITYLSIF 727
           G+YLDLH  Y +YIN K  E+V+Y  YL +F
Sbjct: 135 GRYLDLHDMYNQYINSKFGERVEYSAYLDVF 165


>At3g11560.3 68416.m01412 expressed protein
          Length = 872

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +3

Query: 225 KNGNNFRATKYHEERERTMDAMVKEILHKKTGH---RETINADHRLKNLHDRYIEASIRL 395
           +N +N +A K+  +  +T+    +E+   K      RE+ + D  L+++ +  +     L
Sbjct: 502 ENPSNVKAAKFLSKGHKTLVRCKEELGILKNASSIVRESNSFDKALESVDEALVRLESLL 561

Query: 396 KELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFQE 512
           +ELY       KE+I A        E   +LK+  EF E
Sbjct: 562 QELYVSNSSSGKEQIKAACSD---LEKIRKLKKEAEFLE 597


>At3g11560.2 68416.m01411 expressed protein
          Length = 872

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +3

Query: 225 KNGNNFRATKYHEERERTMDAMVKEILHKKTGH---RETINADHRLKNLHDRYIEASIRL 395
           +N +N +A K+  +  +T+    +E+   K      RE+ + D  L+++ +  +     L
Sbjct: 502 ENPSNVKAAKFLSKGHKTLVRCKEELGILKNASSIVRESNSFDKALESVDEALVRLESLL 561

Query: 396 KELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFQE 512
           +ELY       KE+I A        E   +LK+  EF E
Sbjct: 562 QELYVSNSSSGKEQIKAACSD---LEKIRKLKKEAEFLE 597


>At3g11560.1 68416.m01410 expressed protein
          Length = 619

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +3

Query: 225 KNGNNFRATKYHEERERTMDAMVKEILHKKTGH---RETINADHRLKNLHDRYIEASIRL 395
           +N +N +A K+  +  +T+    +E+   K      RE+ + D  L+++ +  +     L
Sbjct: 502 ENPSNVKAAKFLSKGHKTLVRCKEELGILKNASSIVRESNSFDKALESVDEALVRLESLL 561

Query: 396 KELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFQE 512
           +ELY       KE+I A        E   +LK+  EF E
Sbjct: 562 QELYVSNSSSGKEQIKAACSD---LEKIRKLKKEAEFLE 597


>At5g49520.1 68418.m06128 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 399

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 699 TFSIXFKLMYFS*HECRSKYFPIALLHQ*TRQELCNPQQDFPFD---LPNSSNSTDMGTD 529
           T S+ F   YF  H   +    + LL Q  +    +    F FD   LPN++N+T   TD
Sbjct: 73  TSSLPFPYSYFEDHSSNNPNSFLDLLRQDHQFASSSNSSSFSFDAFPLPNNNNNTSFFTD 132

Query: 528 I 526
           +
Sbjct: 133 L 133


>At1g78840.1 68414.m09190 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 439

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 611 LDRNCVILSRIFPLICPTLQILQTWVQIFHLDV 513
           +D +C+ L   F   CP L+ L+ WV    LD+
Sbjct: 316 MDSSCLKLLPTFLASCPNLKSLELWVHDHRLDI 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,546,832
Number of Sequences: 28952
Number of extensions: 307376
Number of successful extensions: 797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)