Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0206
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    30   0.27 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   2.5  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   7.6  

>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +1

Query: 496 RYGIFDSVAALKARDKSYAIAYKPKKTNSXDKKVCRYTSNVSHFNGFSMARQNFLXVFL 672
           RY +  S+A  +  D  ++   K   TN      C++   + HF+ F   +Q+ L  +L
Sbjct: 414 RYIMLSSLAKTREADFFWSEEEKTNYTNELLSNPCKFLCELDHFDSFPHQQQDLLWKYL 472


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 495 KIKPNTPTLSTI*LAFDTFTRCA 427
           KI P TP LST+ LA D F+  A
Sbjct: 436 KISPTTPRLSTLALADDMFSSTA 458


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 128 ALK*IINL*YSTFKYMYKHRCCILFY 51
           AL  I+++ +  F + Y  RCC+ FY
Sbjct: 27  ALVIILSVIFINFFFFYLCRCCVYFY 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,708
Number of Sequences: 5004
Number of extensions: 46159
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)