Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0206
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0393 + 13435581-13435745,13435804-13436418,13437283-134373...    28   6.0  
02_01_0579 - 4293528-4294117,4294561-4294762,4296145-4296348,429...    28   6.0  

>05_03_0393 +
           13435581-13435745,13435804-13436418,13437283-13437349,
           13437605-13438239
          Length = 493

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 273 RAIFLNINKSKKLNC-PLHTHKLDCARERDGQIFMMRMQ-CDVTP 401
           RA  LN+N   K++C PL + ++ C  ++ G+ F++    C+  P
Sbjct: 15  RASALNVNNQSKMDCFPLASREVICT-DQSGRAFLVNADTCEFVP 58


>02_01_0579 -
           4293528-4294117,4294561-4294762,4296145-4296348,
           4296425-4296585,4296665-4297158,4297526-4297584,
           4297766-4297841,4298511-4298552,4298757-4298860,
           4299071-4299280
          Length = 713

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 413 TNTTQAQRVNVSNASYMVDRVGVLGFIFVTEFLIRSLHSKP 535
           TNT      ++ +A+    R  + GF+ VTE L+  LH KP
Sbjct: 12  TNTRPGFTTSLGSATGENLRSELRGFVCVTELLLMDLHVKP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,985,571
Number of Sequences: 37544
Number of extensions: 263725
Number of successful extensions: 451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)