Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0206
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)                    30   1.5  
SB_17885| Best HMM Match : V-set (HMM E-Value=0.051)                   30   1.5  
SB_12128| Best HMM Match : TPR_1 (HMM E-Value=4.7e-21)                 28   8.0  

>SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)
          Length = 399

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 559 YKPKKTNSXDKKVCRYTSNVSHFNGFSMARQNFLXV 666
           YK    N   K V  YT N S+ +GFS+ RQ+FL V
Sbjct: 293 YKLMLVNVGQKHVGMYTCNASNTHGFSL-RQSFLTV 327


>SB_17885| Best HMM Match : V-set (HMM E-Value=0.051)
          Length = 191

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 559 YKPKKTNSXDKKVCRYTSNVSHFNGFSMARQNFLXV 666
           YK    N   K V  YT N S+ +GFS+ RQ+FL V
Sbjct: 85  YKLMLVNVGQKHVGMYTCNASNTHGFSL-RQSFLTV 119


>SB_12128| Best HMM Match : TPR_1 (HMM E-Value=4.7e-21)
          Length = 230

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 511 DSVAALKARDKSYAIAYKPKKTNSXDKKVCRYTSNVSHFNGFSMARQNFLXVFLVI 678
           D  AAL+   K  AI+++ K TN+  K  C    N+ H  G   A   F    L I
Sbjct: 141 DFQAALECHQKRLAISHELKDTNAIGKS-CASLGNIYHVMGDLPASIRFYQEMLKI 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,439,892
Number of Sequences: 59808
Number of extensions: 332581
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)