Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0205
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    25   0.92 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   3.7  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   4.9  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   6.5  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 157 EYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKKPPVP 270
           + G+K  W   +PE        L+ EQ+++L + PP P
Sbjct: 217 DVGKKCDWVRNVPECADWYKGRLTDEQLKEL-ENPPTP 253


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 661 NIRGMP*TNLPTTQSMQTRGNLLVXCLFAPAP 756
           N+ G+P       Q++   G L+V C FA  P
Sbjct: 507 NVYGLPFVRSMEKQAIVAGGTLIVHCPFAGHP 538


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -2

Query: 271 KALVASFLIVQF 236
           KALVASFL+V F
Sbjct: 3   KALVASFLLVYF 14


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 163 GEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKKPPVPCTV 279
           GE +     L EEP T    + +   E   +K P P  +
Sbjct: 5   GEDQDLVQDLIEEPATFSDAVLSSDEELFHQKCPKPAPI 43


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 306 LSSFHKLMYHRARHWW 259
           +SS   LMY + R WW
Sbjct: 153 MSSHGPLMYGQPRVWW 168


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,853
Number of Sequences: 336
Number of extensions: 4296
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)