Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0205
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    42   8e-05
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    30   0.44 
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   3.1  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           27   4.1  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    27   4.1  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   5.4  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.5  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   9.5  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   9.5  

>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 16/50 (32%), Positives = 35/50 (70%)
 Frame = +3

Query: 297 TKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLIN 446
           ++T   G++D +  +TL++ G   DR++A T+L+Q++P++ + AL  L++
Sbjct: 78  SETLGHGTADKRMLQTLISSGTTSDRISALTLLVQESPIHAVKALETLLS 127


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 196 QVADETISFFHHIQGFRRNSLRYPGLSYHLRSYQLDRN*CKPHQLIY 56
           QVA++   FFH+  G  R+ +     SYH  +Y +D N     Q +Y
Sbjct: 632 QVAEKVKRFFHYY-GINRHKMTTLTPSYHAETYGVDDNRYDLRQFLY 677


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 77  TLITVKLIRTQMIRKARVSQRISPKALNMVKKRNGFISYLKNQSRCQKHYRQN 235
           T+ +V+L  TQ   +  V + + PK +  V K  GF+ + KN  R     R+N
Sbjct: 529 TVSSVRLGHTQRHLR-HVPEYLLPKGMQAVNKDIGFVPFKKNNRRKVFKSRKN 580


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +3

Query: 630 YYEDH*KNYMEHTWDALNKFAHDTVDANKGKSV 728
           Y++ H K +M+   D  NKF+++T+  +   ++
Sbjct: 79  YFQTHVKEFMKEYVDRENKFSNETISKSSAAAL 111


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 193 PEEPVTLPKTLSTEQIEQLRKKPPVP 270
           P E + L   ++ E ++  +K PPVP
Sbjct: 222 PSESMVLSNNIAAEDLDFFKKSPPVP 247


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 656 IILSMIFIIPQFQYIPLCLFVAPTSSHLGV--LADA 555
           I+L+  FI+P F  +P C+  +   S LGV   ADA
Sbjct: 414 ILLATFFIMPVFSTVPTCMLASMVVS-LGVSLFADA 448


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 315  GSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTA 428
            G ++  +  TL +KG     V+AA  L+Q   LY + A
Sbjct: 1235 GFAEEPYRMTLFSKGQEALNVSAADFLVQGENLYFVVA 1272


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 677 GIPRMFHIILSMIFIIPQFQYIPLCLFVAPTSSHLGVLAD 558
           GI     + L   + +P F Y   C+F+   SS + +L++
Sbjct: 112 GIVISLLVSLFYFYSLPNFPYSKTCIFIYTVSSFIELLSE 151


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 174 LFFTIFKAFGEILCDTLAFLI-ICVLISLTVISVSLIN*YIFLKSFMLHCKLLYHV 10
           LF+  F A G  LC T+  L  +C   SL     +  + Y   ++ +L   L YH+
Sbjct: 270 LFYARFSAVGHNLCPTITELCKLCSKESLDAFLPAFYDVYFQCRTRLLKPVLDYHL 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,768
Number of Sequences: 5004
Number of extensions: 70224
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)