Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0205
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 38 0.012
09_02_0575 + 10845261-10847057 31 1.4
03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,256... 29 3.2
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411... 29 4.3
01_01_0812 + 6318453-6318726,6318826-6319041,6319147-6319665,632... 29 5.7
06_01_0888 + 6805071-6805485,6806202-6806374,6806501-6806549,680... 28 7.5
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232 28 7.5
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101... 28 9.9
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +3
Query: 309 RSGSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLINNV 452
+ GS D + + G D+V+A T LI+DNP+ N+ AL +L+ V
Sbjct: 181 KRGSGDLKLLEISAKSGTSADKVSAFTCLIEDNPIANMRALDSLLGMV 228
>09_02_0575 + 10845261-10847057
Length = 598
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 178 WFHQLPEEPVTLPKTLS-TEQIEQLRKKPPVPCTVIH*LMKR 300
WF QL E V L T S E+ E +R+ PP+P + LM+R
Sbjct: 152 WFSQLDVEWVLLLHTCSEEEEDEHVRRPPPLPVEDLMALMER 193
>03_01_0330 +
2566662-2566740,2566821-2566911,2567003-2567057,
2567166-2567297,2567517-2567567,2567769-2567840,
2568590-2568680,2568988-2569066,2569147-2569210,
2569917-2570020,2570182-2570287,2572080-2572157,
2572649-2572801,2573039-2573128,2573284-2573349,
2573485-2573583,2573660-2573734,2574455-2574514,
2574909-2574998,2575202-2575323,2575462-2575591,
2575662-2575741,2576167-2576302,2577005-2577086,
2578475-2578620,2578796-2578876,2578994-2579094,
2579770-2580008,2580100-2580209,2580518-2580646,
2580728-2580802,2581455-2581586,2582298-2582470,
2582566-2582688,2582771-2582831,2582910-2583005,
2583251-2583351,2584014-2584119,2584673-2584786,
2584888-2584962,2585619-2585711,2585883-2585954,
2586253-2586338,2586434-2586527,2586596-2586703,
2586782-2587021
Length = 1579
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 723 ISPCLHRLCRGQICSRHPTYVPYNSFNDLHN 631
I C+ LCR ++ +P Y +N+ N++ N
Sbjct: 438 ICKCITELCRHKLSQTNPLYTEFNASNEIPN 468
>02_05_0441 +
29040250-29040524,29040656-29040772,29040834-29041143,
29041863-29042018,29042332-29042483,29042783-29042936,
29043897-29043998,29044168-29044209
Length = 435
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 481 IIPSFFLAGLTLFIKFLSAVKLYNGLSWIRIVAAATLSPIAPLFRRVLA 335
++ SFF+ GLT F + + GLS+ AA + P P+F +LA
Sbjct: 81 LLVSFFILGLTGI--FANQLLFLFGLSYTNPTYAAAIQPSIPVFTFILA 127
>01_01_0812 +
6318453-6318726,6318826-6319041,6319147-6319665,
6320853-6321064
Length = 406
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 624 VSIYPSLFVCCPDVISSRC-PSGCCSKVRNLTSGISNSDIVALTGH 490
VS++ + VCC V SRC G + +N TS S D + TG+
Sbjct: 7 VSVFVAALVCCSLVRLSRCGGGGGGQRAQNYTSMFSFGDSLTDTGN 52
>06_01_0888 +
6805071-6805485,6806202-6806374,6806501-6806549,
6806654-6806820,6806919-6807002,6807097-6807135
Length = 308
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 112 DKKGQGIAK--NFAESLEYGEKKKWFHQLPEEPVTLPKTLSTE 234
DKK +G + N L+ EK W QLPE +T+P T+
Sbjct: 130 DKKEEGNVRKPNAGNGLDL-EKYSWIQQLPEVTITVPVPQGTK 171
>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
Length = 549
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 627 WYYEDH*KNYMEHTWDALNKFAHDTVDANKGKS 725
WY +D N E TWD+ + T D++ K+
Sbjct: 221 WYSKDSSSNITETTWDSSSNTTQTTWDSSSNKT 253
>02_01_0141 +
1017654-1017745,1018332-1018389,1018485-1018595,
1018853-1018990,1019559-1019628,1019711-1019766,
1020203-1020328,1020648-1020787,1020932-1021004,
1021095-1021169,1021277-1021591
Length = 417
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 109 DDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQI 240
D + G+G+ N S+++G+K+K + E P T P + QI
Sbjct: 153 DRRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGTAPFSEPEAQI 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,590,940
Number of Sequences: 37544
Number of extensions: 433388
Number of successful extensions: 999
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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