Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0205
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)                   38   0.012
SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.012
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)                 29   5.8  
SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)         28   7.6  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              28   7.6  
SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.6  

>SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)
          Length = 573

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = +3

Query: 306 NRSGSSDHQWAKTLLNKGAIGDRVAAATILIQ 401
           +RS  SD +W +T+++ G +GD++AA T+ +Q
Sbjct: 140 SRSKGSDGEWLRTVVSSGTLGDKIAALTLQVQ 171


>SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 13/32 (40%), Positives = 24/32 (75%)
 Frame = +3

Query: 306 NRSGSSDHQWAKTLLNKGAIGDRVAAATILIQ 401
           +RS  SD +W +T+++ G +GD++AA T+ +Q
Sbjct: 85  SRSKGSDGEWLRTVVSSGTLGDKIAALTLQVQ 116


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 211 LPKTLSTEQIEQLRKKPPVPCTVI 282
           +PK  + E +E+LRK+P VP  ++
Sbjct: 349 MPKKANLEDLEELRKRPAVPADIV 372


>SB_42243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 416 QFNSA*KFNKQCQTGQEERRYYYNRCPVRATISELLIPDVKLRTFEQH 559
           +++S  + +  C+   EE RYYY +CP   +  + +  ++ L     H
Sbjct: 345 KYSSLEETDNLCREEIEEMRYYYEKCPEVVSEQKTVYVEIALYLINLH 392


>SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)
          Length = 366

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 163 GEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKKPPVPCTVIH 285
           GE+ K+F  LP   V +P+T S  + + + +    PC + H
Sbjct: 125 GEEMKYFPGLPSRFVIIPRTQSRLKSQGIIQVDTDPCHIFH 165


>SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)
          Length = 748

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 636 HNTTVSIYPSLFVCCPDVISSRCPS 562
           H T VSI P L + C D+IS   P+
Sbjct: 151 HRTFVSIIPGLLLLCGDIISQPGPT 175


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -3

Query: 699  CRGQICSRH-PTYVPYNSFNDLHNTTVSIYPSLFVCCPDVISSRCPSGCCSKV 544
            C G  C    PT     + N  H++T S  PS   C P   +  CP+ CC  V
Sbjct: 1374 CSGDHCGAECPTQCCLLADNGQHSSTASC-PS--ACSPSGCNPDCPARCCITV 1423


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 636 HNTTVSIYPSLFVCCPDVISSRCPS 562
           H T VSI P L + C D+IS   P+
Sbjct: 520 HRTFVSIIPGLLLLCGDIISQPGPT 544


>SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 968

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 636 HNTTVSIYPSLFVCCPDVISSRCPS 562
           H T VSI P L + C D+IS   P+
Sbjct: 79  HRTFVSIIPGLLLLCGDIISQPGPA 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,193,542
Number of Sequences: 59808
Number of extensions: 522112
Number of successful extensions: 1360
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)