Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0205
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical pr...    45   7e-05
AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical ...    32   0.55 
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    30   2.2  
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    29   2.9  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    29   5.1  
Z66524-8|CAH10782.1|  753|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z66523-10|CAH04723.1|  753|Caenorhabditis elegans Hypothetical p...    28   6.7  
U41992-3|AAL02507.1|  134|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st...    28   6.7  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z29094-6|CAD45581.1|  457|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z29094-5|CAA82336.1|  465|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine re...    28   8.9  

>Z77659-5|CAB01168.1|  953|Caenorhabditis elegans Hypothetical
           protein F23B12.7 protein.
          Length = 953

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 31/173 (17%), Positives = 69/173 (39%)
 Frame = +3

Query: 252 KEATSALHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTAL 431
           +E    +  D    +TK  +   S+  W  ++++KG   D+  A  + +  +P+++L  +
Sbjct: 128 EEGKDEMAQDAALLQTKEKQDNGSEASWLYSVISKGTATDKRTAMQLQMHKSPVHSLEYI 187

Query: 432 RNLINNVXXXXXXXXXXXXXXLSELLYPNC*YQMLNYVPSNSIR*DT*MR*RRGNKQTKR 611
             LI +               L ++   +C  +    +P +            GN++ +R
Sbjct: 188 EKLIASCKKQGTRDVVDIIPILEDVFINHCLPENRKLIPFSKRALRELTELSSGNQRLRR 247

Query: 612 DILKLWYYEDH*KNYMEHTWDALNKFAHDTVDANKGKSVSAMSICSCTLPEXE 770
            IL +W +E   K   +   + L +     ++    +S+  ++ C    PE E
Sbjct: 248 KILLMWAFEHELKILYQQFIETLVEIIKRPLEEVIKRSLKTLANCLMGRPESE 300


>AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical
           protein C24D10.1 protein.
          Length = 482

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 28  TMKHKRFEENILIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPV 207
           +MK  +   N   D   ++      NAD   G+ +AK + +S++  E KK F +L    +
Sbjct: 138 SMKKTKGAPNSTTDTPVSHKTSITGNADKWVGEDVAKTWMDSIDLAEVKKDFEKLQTMKI 197

Query: 208 TLPKTLST 231
            + K   T
Sbjct: 198 DIDKDCKT 205


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +1

Query: 94  ADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKK 258
           A+KN +DKK +   K   E  E  EKK+   +  EEP    +    EQ E++ KK
Sbjct: 281 AEKNEEDKKEEEPKKE-EEKKEEVEKKEEDEKKDEEPKKEEEKKEEEQKEEVEKK 334


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = -3

Query: 786  SVSRIFPXPEGCRSK*TXH*QISPCLHRLCRGQICSRHPTYVPYNSFNDLHNTTVSIYPS 607
            S+SRI P P   ++    H     CL+    G  C + PT     + +D         PS
Sbjct: 1067 SISRIVPTPSIQQTMPGTH--FGECLNVAPLGAFCLQRPTIADCKNDDDC--------PS 1116

Query: 606  LFVCCPDVISSRC 568
            L+ CC D    RC
Sbjct: 1117 LYKCCSDGCVMRC 1129


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 222 CFWQRDWFFR*LMKPFLFFT--IFKAFGEILCDTLAFLI 112
           C W+ +WF   + +PFL ++  IF  F E L   + +LI
Sbjct: 20  CSWKSEWFETGVKRPFLGYSIMIFGVFIEFLYPPIIYLI 58


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 116 RKARVSQRISPKALNMVKKRNGFISYLKNQSRCQKH 223
           R++ V QR+ P  +N  K++NGF       ++  KH
Sbjct: 301 RQSLVWQRVFPMEINGKKRKNGFRELFSASTKLSKH 336


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 116 RKARVSQRISPKALNMVKKRNGFISYLKNQSRCQKH 223
           R++ V QR+ P  +N  K++NGF       ++  KH
Sbjct: 437 RQSLVWQRVFPMEINGKKRKNGFRELFSASTKLSKH 472


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 140 ISPKALNMVKKRNGFISYLKNQSRCQKH 223
           I+P++LN++  R+   +YL +  RC K+
Sbjct: 294 IAPQSLNIISARDDIHAYLNSPDRCPKY 321


>Z66524-8|CAH10782.1|  753|Caenorhabditis elegans Hypothetical
           protein T13H5.1b protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +1

Query: 97  DKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKK 258
           D+N  ++      +NF  ++E+ +++K    +P  PV   K ++   +++ RKK
Sbjct: 60  DRNIHERTASRSTQNFVNTVEHLQEEKAMQAVPTSPVDASKFVA--YVQERRKK 111


>Z66523-10|CAH04723.1|  753|Caenorhabditis elegans Hypothetical
           protein T13H5.1b protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +1

Query: 97  DKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKK 258
           D+N  ++      +NF  ++E+ +++K    +P  PV   K ++   +++ RKK
Sbjct: 60  DRNIHERTASRSTQNFVNTVEHLQEEKAMQAVPTSPVDASKFVA--YVQERRKK 111


>U41992-3|AAL02507.1|  134|Caenorhabditis elegans Hypothetical
           protein F32E10.8 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
 Frame = -3

Query: 702 LCRGQI-CSRHPTYVPY-----NSFNDLHNTTVSI---YPSLFVCCPDVISSRCPSGCCS 550
           +C G+I C  H   +P      NS+N L    VS+    PS +  C D  S   P+  C 
Sbjct: 47  MCDGKIDCPDHSDELPNICLKRNSYNKLQLQDVSVGLKCPSFWFRCTDSSSCIAPNRVCD 106

Query: 549 KVRNLTSG 526
           K ++   G
Sbjct: 107 KYKDCRDG 114


>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 1 protein.
          Length = 1616

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = +1

Query: 37   HKRFEENILIDEAYT---NYGQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQL--PEE 201
            +++++E     E Y+    Y    +N + K+    ++  ++ +E  + K++ H++    E
Sbjct: 1491 YRKYDERKYESEEYSFEETYDYEQENTNKKQKNQRSQKKSDLVEKTQIKEFSHRICFSVE 1550

Query: 202  PVTLPKTLSTEQIEQLRKKPPVPCTVIH*LMKRRQTEAAHQ 324
            PV   +    E +EQ ++K    C   H    RR  + A Q
Sbjct: 1551 PVAECRRRGYEAVEQQQRKVRFTCLPRHSSEARRLVKEARQ 1591


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
 Frame = -3

Query: 696 RGQICSRHPTYV--PYNSF---NDLHNTTVSIYPSLF------VCCPDVISSRCPSG 559
           +G +C+   T    P N F   N +HNT  S Y   F      VCC +    RCPSG
Sbjct: 780 KGAVCANGETPFRGPDNKFQECNFVHNTCPSGYQCEFSSTGQAVCCTNTNVIRCPSG 836


>Z29094-6|CAD45581.1|  457|Caenorhabditis elegans Hypothetical
           protein C07A9.7b protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 193 PEEPVTLPKTLSTEQIEQLRKKPPVP 270
           PE P   PK LST+ IE + +  P P
Sbjct: 121 PEPPSCAPKALSTQDIEAIFQLTPFP 146


>Z29094-5|CAA82336.1|  465|Caenorhabditis elegans Hypothetical
           protein C07A9.7a protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 193 PEEPVTLPKTLSTEQIEQLRKKPPVP 270
           PE P   PK LST+ IE + +  P P
Sbjct: 121 PEPPSCAPKALSTQDIEAIFQLTPFP 146


>AC006693-2|AAF60378.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein271 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 728 NRFPLVCIDCVVGKFVQGIPRMFHIILSMIFIIPQFQYIP 609
           NRF ++  +    KFV+     F+ IL+++F IP +  IP
Sbjct: 115 NRFYIMFAENTFWKFVRVSYFAFNYILALLFFIPPYLRIP 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,089,371
Number of Sequences: 27780
Number of extensions: 398866
Number of successful extensions: 1097
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)