Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0205
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 508 SSSDRASIIIIPSFFLA 458
           S  DRAS I+ P FFLA
Sbjct: 421 SKIDRASRIVFPLFFLA 437


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 567 PSGCCSKVRNLTSGISNS 514
           P+ CC+   N T  ISNS
Sbjct: 160 PASCCNSPENNTCSISNS 177


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 407 IVLDKNCGSGNSISDST 357
           I L +N  SG SISDST
Sbjct: 536 ISLSENLSSGLSISDST 552


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 106  ADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTL 225
            A   K  G+  + + S+  G+++    Q  ++P+ LP  L
Sbjct: 1208 ASGNKNVGVGVSNSGSVVLGKQQPSQQQTQQQPIILPSQL 1247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,080
Number of Sequences: 438
Number of extensions: 4890
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)