Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0203
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical pr...    32   0.52 
AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical ...    32   0.52 
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    31   1.2  
Z22174-4|CAA80129.2|  361|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 667 PMFTFYNXPLSLKVLLVTGFTTFFCPLIPVFLGF-GAIFNLENCWL 533
           P FT+Y      K  L TG  +F+C +IP    F  +IF+    WL
Sbjct: 83  PWFTYYYTLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFHTMAIWL 128


>AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 667 PMFTFYNXPLSLKVLLVTGFTTFFCPLIPVFLGF-GAIFNLENCWL 533
           P FT+Y      K  L TG  +F+C +IP    F  +IF+    WL
Sbjct: 83  PWFTYYYTLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFHTMAIWL 128


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -2

Query: 637 SLKVLLVTGFTTFFCPLIPVFLGFGAIFNLENCWLGFGSFGC-CAAAFLAKG 485
           S+K+      T+   P+      FGAI     CW+GF SF   C   FL  G
Sbjct: 264 SVKMAFYLVATSLLTPMAATVASFGAI-----CWMGFPSFSIQCVTPFLVLG 310


>Z22174-4|CAA80129.2|  361|Caenorhabditis elegans Hypothetical
           protein K01B6.2 protein.
          Length = 361

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -2

Query: 679 VLSSPMFTFYNXPLSLKVLLVTGFTTFF-CPLIPVFLGFGAIFNLENCWLGF 527
           V+S   F     P S + +    FTTF  C +I V  GF     + +C +GF
Sbjct: 109 VISLNRFISLYFPTSYQNIFTERFTTFLICSIIFVSFGFSWFLVIRDCQMGF 160


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 120 VSQNTGTCPESSCACPETSCAC 185
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,019,185
Number of Sequences: 27780
Number of extensions: 114922
Number of successful extensions: 309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)