Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0202
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    65   1e-11
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    55   1e-08
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    44   2e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    36   0.005
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    36   0.005
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    35   0.016
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    31   0.26 
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    29   1.1  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    27   3.2  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   5.7  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.7  
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    25   9.9  

>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
 Frame = +3

Query: 507 NEADDHPLAQAL-TNDRGYLASYCDEQLIINISFNQLVKLHSIKI---KGPADKGPKSIK 674
           N+ DDH L  A  +N   +L S  DEQL+I I F ++VK+HSI I   KG     PK+IK
Sbjct: 142 NQQDDHDLKSAFNSNPSSFLESDVDEQLMIYIPFLEVVKVHSIAITPVKGETSSAPKTIK 201

Query: 675 LFINQPRTLDFD 710
           L+INQP  L F+
Sbjct: 202 LYINQPNNLSFE 213



 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 37/103 (35%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
 Frame = +1

Query: 217 PFFRAATSKVSER--VFLKVDVDRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVL 390
           P F    SK +    VF KV+VD     AS  GV AMPTF+F+ N  +ID L G N   L
Sbjct: 39  PLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQAL 98

Query: 391 ENKV----RQYYGSDVAEEDEDNTVAGHMDLITFITKSECECL 507
           + KV     +  G+          V G   L   I   + ECL
Sbjct: 99  KEKVALISSKATGTGALASSSSAPVKGFASLQGCIENPQLECL 141



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +2

Query: 113 IQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF--PREYFSK 268
           I++  H+ + +  +G   + VD  A WC PC+ I+P F QL +K+  P+  F+K
Sbjct: 6   IRSYQHWISTIPKSG--YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAK 57


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 24/63 (38%), Positives = 38/63 (60%)
 Frame = +1

Query: 217 PFFRAATSKVSERVFLKVDVDRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLEN 396
           P F   ++  S+  F+KVDVD+ ++ A+  GV AMP+F  Y+N  KI+ + G N   LE 
Sbjct: 38  PKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEA 97

Query: 397 KVR 405
            ++
Sbjct: 98  SIK 100



 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 21/36 (58%), Positives = 23/36 (63%)
 Frame = +2

Query: 161 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPREYFSK 268
           KLVVVDF ATWC PC+ IAP FEQ    +    F K
Sbjct: 19  KLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIK 54


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = +1

Query: 217 PFFRAATSKVSERVFLKVDVDRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLEN 396
           PF    + +  +  F+ V+ D+ +D A   GV A+PT + +R   ++DR+ G +   L +
Sbjct: 55  PFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSS 114

Query: 397 KVRQY 411
            + +Y
Sbjct: 115 LLAKY 119



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 161 KLVVVDFTATWCPPCQRIAPFFEQL 235
           K+ VVDF A WC PC+ + PF E+L
Sbjct: 36  KVTVVDFYADWCGPCKYLKPFLEKL 60


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 152 AGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF 247
           A  K  +++F ATWC  C+ +AP +E+L A F
Sbjct: 37  ASKKGALIEFYATWCGHCKSLAPVYEELGALF 68



 Score = 34.7 bits (76), Expect = 0.016
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 161 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRE 256
           K V+V+F A WC  C+R+AP +E L   F  E
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETLGKVFKNE 190


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +1

Query: 256 VFLKVDVDRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQY 411
           VFLK++ ++ +D A +  V+A+P F+       + R+ G N   L+  + +Y
Sbjct: 53  VFLKIEAEKFSDIAESFDVNAVPLFVLIHGAKVLARISGANPQKLKAAIDEY 104



 Score = 30.7 bits (66), Expect = 0.26
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 131 FQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPREYFSK 268
           FQ  + N   ++++++F A W  PC+++   F+Q         F K
Sbjct: 11  FQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLK 56


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 158 TKLVVVDFTATWCPPCQRIAPFFEQLPAKF 247
           TK V+V+F A WC  C+ +AP +E+L  ++
Sbjct: 373 TKDVLVEFYAPWCGHCKNLAPTYEKLAEEY 402



 Score = 29.1 bits (62), Expect = 0.80
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 161 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPREYFS 265
           K+++V F A WC  C+ +AP +E    +  ++  S
Sbjct: 40  KVLMVKFYAPWCGHCKALAPEYESAADELEKDGIS 74


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 98  GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQL 235
           G  T+  N  +F+  +   G  LVV  F A WC  C+++ P +++L
Sbjct: 30  GSNTIELNSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKL 73


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 214 NPLARWTPSCCKVHND*LGSSVSHFSLE 131
           NPL RWTP   K H    G+S S + ++
Sbjct: 442 NPLKRWTPDQAKNHPFITGASFSQYCID 469


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 363 SVDFGPVSVENECGHCTDALSTRCIGAS 280
           SV+  PVSV+NE  H     S+R   AS
Sbjct: 138 SVELNPVSVDNEVAHGLAVFSSRDAAAS 165


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 376 NTTVLENKVRQYYGSDVAEEDEDNTVAGHM 465
           NT+ + + +  +YGSD+ E ++D   A  M
Sbjct: 366 NTSFVSSNINNWYGSDLEELEQDVKTAKSM 395


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +1

Query: 646 QLTKDPNL*SYSSINPELWTLIRAAGYSSVQDLELTPSDWEGNPGTTLNSS 798
           QL   PNL +YSS+    W       Y  +    LT    +G+ GT  NSS
Sbjct: 239 QLRGGPNL-TYSSVQNASWFQTAEYPYPLIVTQGLTGGLPDGSNGTATNSS 288


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 355 IDRLEGGNTTVLENKVRQYYGSDVAEEDEDNTV---AGHMDLITFITKSECECLM 510
           ID+  G N  V+    R++ G+ V  +D  N V       D +T +T+   E L+
Sbjct: 11  IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLL 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,580
Number of Sequences: 5004
Number of extensions: 59637
Number of successful extensions: 191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)