Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0201
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   1.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 449 KKTGPPAVEVTSAEQAKELIMPILLLYLVSFRTRAQP 559
           K    P V  +  E +  L+  ILL YLV+F    +P
Sbjct: 680 KHNDTPVVRASGRELSYVLLSGILLCYLVTFALVLRP 716


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -2

Query: 469 SRGASLLLQPTDDVISLTTT*IVDRTAIPEEFESRVSSYTVALGEILFLSC 317
           ++G  L   P   +  LTT  ++ +  IP+E     S YT  + +I    C
Sbjct: 270 AKGGKLACPPAIFIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDC 320


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 789 SARIQRLVGCSGQH 748
           SAR QR+ GC+G H
Sbjct: 396 SARHQRIGGCNGLH 409


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 81  LKHAFRYYRHLFASLLRRRNSVKCRK 4
           LKH +   R   AS++ R+ +V C K
Sbjct: 165 LKHPWICQRERVASVVHRQETVDCLK 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,308
Number of Sequences: 438
Number of extensions: 3650
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)