Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0200
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 28 0.72
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 1.3
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ... 27 1.7
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 27 2.2
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 26 3.8
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 26 3.8
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 25 6.7
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 25 8.9
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 25 8.9
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 28.3 bits (60), Expect = 0.72
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 271 EGCFLTNHLVRDSFSLSLVMRGDTPVNVLKSSAIL 167
EG F HL+ D +LS + G V V S+A L
Sbjct: 328 EGAFYAKHLILDLSTLSPAVSGPNSVKVYNSAATL 362
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 74 RRFKIR-CLLILKRYLITEIFLNIIQILFKAKQNGR-RLQNVDR-RVSSHHQRETERISN 244
R IR C+L L + +++ Q K +Q G +L+ +D + + +R +
Sbjct: 268 RNILIRSCMLDLIQTTEEKLYEQYRQEQMKVRQYGEPKLRTIDNAKFKEEEENLRKRFTE 327
Query: 245 QMVREETTFTHWE 283
Q+ EET F WE
Sbjct: 328 QVRVEETRFRQWE 340
>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
Apc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 221 RETERISNQMVREETTFTHWEYVGDTGKGDSYLSELIRIKIYGLNSNKESKHVQCV 388
++ E ++ V E T + H VGD G+ LI+IKI + + + HV+ +
Sbjct: 104 QDLEIVTTVQVEEPTGWVHVP-VGDFGRNGLLDVHLIQIKILANHQSGKDSHVRLI 158
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = +2
Query: 113 YLITEIFLNIIQILFKAKQNGRRLQNVDRRVSSHHQRETERISNQMVREETTFTHWEYVG 292
Y I E L ++Q L K + N S I + + +WE++
Sbjct: 267 YRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNYRFIESVTCGTPFVYENWEWIP 326
Query: 293 DTGKGDSYLSELIR 334
T KG+S++ IR
Sbjct: 327 VTIKGNSFMLNQIR 340
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 3.8
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 281 EYVGDTGKGDSYLSELIRIKIYGLNSNKESKHVQCVLKSIPKNVSR 418
E GD KG S + I G N + +S H+Q + KSI K +R
Sbjct: 5 EAEGDILKGKSRIL-FPGTYIVGRNVSDDSSHIQVISKSISKRHAR 49
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 338 KIYGLN--SNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNEIS 463
++YG++ NK+ + + L K R++ FF+NEIS
Sbjct: 264 RVYGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEIS 307
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 188 NVDRRVSSHHQRETERISNQMVREET 265
N RR+S QR+ +RI+ ++ EE+
Sbjct: 118 NGGRRISQQGQRDLDRIAYSLLEEES 143
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 8.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 299 GKGDSYLSELIRIKIYGLNSN-KESKHVQCV---LKSIPKNVSRRLTFRSN 439
G G SYLS L ++GLN K++K + L I V+RR F N
Sbjct: 86 GTGTSYLSGLAIGGLWGLNEGMKKTKDITSTRLRLNGILNGVTRRGPFVGN 136
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 445 ELIAAERQAPRYVFWDAL*YAL 380
E ++A+ Q P+Y++W+ Y L
Sbjct: 170 EFVSAKGQCPKYLYWNNKSYLL 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,043
Number of Sequences: 5004
Number of extensions: 32594
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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