Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0200
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76780.1 68414.m08935 expressed protein ; expression supporte...    29   1.4  
At5g47500.1 68418.m05865 pectinesterase family protein contains ...    29   2.5  
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam...    28   3.2  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   3.2  
At3g11480.1 68416.m01400 S-adenosyl-L-methionine:carboxyl methyl...    27   5.7  
At1g33170.1 68414.m04096 dehydration-responsive family protein s...    27   5.7  
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi...    27   7.5  
At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    27   7.5  
At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit, c...    27   9.9  

>At1g76780.1 68414.m08935 expressed protein ; expression supported by
            MPSS
          Length = 1871

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +2

Query: 140  IIQILFKAKQNGRRLQNVDRRVSSHHQRETERISNQMVRE 259
            I ++L +A  N R+ +  +  V++  + ETER+S++ V+E
Sbjct: 980  IQELLMEAGHNDRKEEEQNENVTAEVELETERVSSKKVQE 1019


>At5g47500.1 68418.m05865 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 362

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 350 LNSNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNE 457
           LN + + + VQ  + SIPKN ++ +T +    FY E
Sbjct: 65  LNGHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYRE 100


>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
           PF04136: Sec34-like family profile; similar to Conserved
           oligomeric Golgi complex component 3 (Vesicle docking
           protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
           sapiens]
          Length = 784

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = +2

Query: 317 LSELIRIKIYGLNSNKESKHV---QCVLKSIPKNVSRRLTFRSNEFFYNEISFY 469
           L  ++++++ G  S ++S+ +   +  L+ I  +V+ RLTFR+  +  +EI+ Y
Sbjct: 417 LVHILKVEVLGDQSARQSEPLAGLRPTLQRILADVNERLTFRARTYIRDEIANY 470


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 341  IYGLNSNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNEI 460
            +Y  N+++ S+H    LK+  K + R++ FRS+   Y ++
Sbjct: 3226 LYSGNNDESSEHTLSKLKTEHKRLQRKVIFRSDPKKYQDL 3265


>At3g11480.1 68416.m01400 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to SAM:benzoic
           acid carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus] and to
           SAM:salicylic acid carboxyl methyltransferase
           (SAMT)[GI:6002712][Clarkia breweri]
          Length = 379

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +2

Query: 221 RETERISNQMVREETTFTHWEYVGDTGKGDSYLS--ELIR-IKIYGLNSNKESKHVQCVL 391
           R TE +   M  +  T+     +G +   +S+L+  E+I  I +   + NK S  + C L
Sbjct: 60  RNTEEM--MMNLDFPTYIKVAELGCSSGQNSFLAIFEIINTINVLCQHVNKNSPEIDCCL 117

Query: 392 KSIPKNVSRRLTFRSNEFFYNEISFYEK 475
             +P+N     TF+   FF  E+    K
Sbjct: 118 NDLPEN-DFNTTFKFVPFFNKELMITNK 144


>At1g33170.1 68414.m04096 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 639

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 437 NEFFYNEISFYEKVLPELSKFR 502
           NE +   IS+Y++++PELS+ R
Sbjct: 468 NEVWKERISYYKQIMPELSRGR 489


>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 700

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 304 LAGVADILPMGEGCFLTNHLVRDSFSLSLVMRG 206
           LAG A+I  +  G  +   L+RD + + +V+RG
Sbjct: 503 LAGCANIPALNLGKAIHGFLIRDGYKIDVVIRG 535


>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 334 ANQLAEVG--ITLAGVADILPMGEGCFLTNHLVR 239
           +N L EVG  ITLA +A+IL    G F+    VR
Sbjct: 699 SNALMEVGPSITLASLAEILAFAVGAFIKMPAVR 732


>At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit,
           component I-1 (ASA1) identical to SP|P32068
          Length = 595

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 201 VSPLITNERLNESLTKWFVRKQPSPIGSMSATP 299
           +S  +T E L + LT W V +   P+G++S  P
Sbjct: 456 ISSTVTGE-LQDGLTCWDVLRAALPVGTVSGAP 487


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,164,954
Number of Sequences: 28952
Number of extensions: 163021
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)