Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0199
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 29 0.47
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.4
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 2.5
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 2.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.3
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 27 3.3
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 27 3.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.8
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 5.8
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.8
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 26 5.8
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 7.6
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 7.6
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.6
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.6
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.6
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.6
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 7.6
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 575 NHYFYNSYSXMYLASIAVF*Y*CKSDRFCVVHL 673
NH +N+ S + AS+ + + C S+ FC+ HL
Sbjct: 930 NHKSHNNQSLLLAASLTLSKFMCLSNNFCMEHL 962
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 35 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 214
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 215 TEKTQKSLFDGI 250
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/70 (21%), Positives = 29/70 (41%)
Frame = +1
Query: 250 REFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPI 429
R F+ ++ E L + + +AE +++ D +KT + + EE P
Sbjct: 644 RSFEQAEKSPISVSESTSLVEVEKPSAEGTNEHKQDATMTLEKTDKQGSLEEEPFPKFSF 703
Query: 430 EAIEAEKGKN 459
+ E G+N
Sbjct: 704 TVLPKENGEN 713
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.5
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +1
Query: 265 SQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIEAIEA 444
S +KH QE D+ + L D V +D+T + + K E +EA
Sbjct: 417 SSIKHKTLQEILNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISK---LYTETVEA 473
Query: 445 EKGKNKFLNGIENFDSTK 498
E+ N+ +G+E S++
Sbjct: 474 EQMSNRIDDGLEYVSSSQ 491
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 219 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 88
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 250 REFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPI 429
R+ + +L T +EK P+ D K+H+ VE KH +++P P I
Sbjct: 136 RKIEEGEL--TSEEEKEPIQD-----LRKSHKR--KSVEKSSVPNKKHKAERKRSPSPKI 186
Query: 430 EAIEAEK 450
E +E ++
Sbjct: 187 EILEDDE 193
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 400 TEEKNPLPPIEAIEAEKGK--NKFLNGIENFDSTKLK 504
TE+ NP P + ++A KGK N + I N D +++
Sbjct: 149 TEKANPANPAKFLKAHKGKKLNGIVETIRNGDQVRVR 185
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 387 EAHDDGRKESTAPDRSYRSGEGKEQISERHRE 482
++HD G S + DR + K++ +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 379 TQMKHTTTEEKNPLPPIEAIEAEKGKNKFLNGIENFD 489
T+ + +T E P I+A+ GKN F +E+FD
Sbjct: 91 TEPQDLSTAETAPKVDIDAVPTIDGKNIFEIDLESFD 127
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 226 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 122
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 376 KTQMKHTTTEEKNPLPPIEA---IEAEKGKNKFLNGIENF 486
K Q+KH + +KN L PI E +K K + I+ F
Sbjct: 58 KGQLKHGVSRQKNKLQPIHKQINYETDKLKERLGKSIDKF 97
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 7.6
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +2
Query: 8 AECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 187
A+ L +SS +Y +++ + ++ + K A ++ TS D +N K
Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783
Query: 188 VLPSAEDVATEKTQKSLFDGIESL 259
+LP+A+DV+++ + S D +E L
Sbjct: 784 ILPNADDVSSKNS--STEDQLECL 805
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 414 ILFFRRRVLHLSLVEVFNSVQEVL 343
I++ + + LHL LV +FN E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 228 WVFSVATSSADGSTIFSLVSTSRRQL 151
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 228 WVFSVATSSADGSTIFSLVSTSRRQL 151
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 228 WVFSVATSSADGSTIFSLVSTSRRQL 151
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 228 WVFSVATSSADGSTIFSLVSTSRRQL 151
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 231 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 133
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,521
Number of Sequences: 5004
Number of extensions: 51956
Number of successful extensions: 204
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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