Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0199
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 33 0.23
At4g09950.1 68417.m01628 avirulence-responsive family protein / ... 30 1.2
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.6
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 29 2.1
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 2.8
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 29 3.7
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 4.9
At5g47580.1 68418.m05873 expressed protein strong similarity to ... 28 4.9
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 28 4.9
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 27 8.6
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 8.6
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 250 REFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFD-KTQMKHTTTEEKNPLPP 426
+E Q+K + +E+N K+V+ + + L + +E + + ++K T +E+N
Sbjct: 772 QEEKERQIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKL 831
Query: 427 IEAIEAEKGKNKFLNGIE 480
EAIE E+ + + + E
Sbjct: 832 REAIELEEKEKRLIEAFE 849
>At4g09950.1 68417.m01628 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 336
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +1
Query: 331 EKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIEAIEAEKGKNKFLNGIENFDSTKLK 504
EK+H +L+G++ Q+K + + K L +A E E+ + K +N I+ S +++
Sbjct: 254 EKSHNEMLEGIKEKISNQLKESLEDVKEQLAKAQA-EREETEKK-MNEIQKLSSDEIR 309
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 59 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 229
T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E
Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133
Query: 230 KS 235
S
Sbjct: 134 SS 135
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 102 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRV*FEPAE 275
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSR
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252
Query: 276 AHRDSGEEPAS 308
R P S
Sbjct: 253 RSRSRSNSPVS 263
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.1 bits (62), Expect = 2.8
Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 14/171 (8%)
Frame = +3
Query: 9 LSARIFYPLPHQKYIDSQWPAP*VTLPP*KT----SPRSPQT*RVSSKASTPAVSVTSTP 176
++ R+ P P + + S PA + PP + SP ++ +P+ S S P
Sbjct: 456 VAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSPSSLSPP 515
Query: 177 MKRLCFRLLKTSPLRRPRSLYSTVSRV*F-------EPAEAHRDSGEEPASGQRCCRSGE 335
++ ++L + P+RR RSL RV P+ +D P G+ +S
Sbjct: 516 GRK---KVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRG--KSSP 570
Query: 336 SPPEPLGRS*TLRQDSDEAHDDGRKESTA---PDRSYRSGEGKEQISERHR 479
S RS R+ + R+ S+A PDR R + R R
Sbjct: 571 SSRHQKARSPVRRRSPTPVNRRSRRSSSASRSPDRRRRRSPSSSRSPSRSR 621
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +1
Query: 274 KHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLPPIEAIEAEKG 453
K ET+E+ L K + ++ + +++ K+QM TEEK P P + E
Sbjct: 128 KKIETEEERRLRKKRELEKQRQDEKHRQQMKNSHKSQMPKGHTEEKKPTPLLTTDRVENR 187
Query: 454 KNK 462
K
Sbjct: 188 LKK 190
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 223 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 104
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At5g47580.1 68418.m05873 expressed protein strong similarity to
unknown protein (pir||E71441)
Length = 748
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = +1
Query: 262 SSQLKHTETQ--EKNPLPDKDV---VAAEKAHQNLLDGVEHFDKTQMKHTTTE--EKNPL 420
S+ + H+E++ + NP +D+ V + L+D + ++ H + +K P+
Sbjct: 395 SNTITHSESEKSDSNPSSRQDLASFVLHLEGEDPLVDVMVRSNREATDHWIEKGRKKQPV 454
Query: 421 PPIEAIEAEKGKNKFLNGIENFDSTKL 501
IE +EA +K GI FDS K+
Sbjct: 455 NLIELLEATTPISKGFEGIAEFDSNKV 481
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +2
Query: 2 RVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 181
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569
Query: 182 KIVLPSAEDVATEK 223
AED A E+
Sbjct: 570 ----LDAEDRAAER 579
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 294 EEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEG 452
E +R +SPP PLG + L ++ DD +E +S G G
Sbjct: 446 EREVKRKRVMERSDSPPPPLGFNNPLLPLANTYDDDDEEEENEQKKSQARGNG 498
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 226 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 101
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,005,589
Number of Sequences: 28952
Number of extensions: 292311
Number of successful extensions: 1005
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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