Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0195
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341...    29   4.2  
01_02_0048 - 10626467-10627498,10628522-10628617                       28   5.6  

>01_06_0646 -
           30832201-30832838,30833643-30833838,30833975-30834126,
           30834258-30834303,30834992-30835216,30835374-30835414,
           30835705-30835834,30835951-30836019,30836254-30836307,
           30836389-30836547,30836854-30836991,30837079-30837141,
           30837225-30837264,30837369-30837415,30838062-30838373
          Length = 769

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 107 LAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAV 226
           +A  I LP E+  A LG  V   HD P APG   +    V
Sbjct: 1   MASHIILPKEEEAA-LGVAVEEDHDSPAAPGYQHQQGPPV 39


>01_02_0048 - 10626467-10627498,10628522-10628617
          Length = 375

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 107 LAMCIALPAEQSGAQLGTTVPVPHDIPQAPGKPEENATAVQPTKQN 244
           LA+ + + AE   A  G   P P  + QAP  PE+ A     T  N
Sbjct: 228 LAVALGVDAEVPSANHGADEPEPLPMLQAPPPPEDMAPESSSTATN 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,215,951
Number of Sequences: 37544
Number of extensions: 234349
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)