Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0193
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 79 4e-16
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 51 1e-07
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 44 1e-05
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 37 0.002
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.11
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.11
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 29 0.33
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.3
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 1.3
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.3
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c... 26 3.0
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 26 3.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 4.0
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 5.3
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 5.3
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 7.0
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 7.0
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 7.0
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 7.0
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 7.0
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 21 9.0
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 9.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.3
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 79.0 bits (186), Expect = 4e-16
Identities = 30/78 (38%), Positives = 39/78 (50%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 199
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 200 CPEGGRESATQTCYNCNK 253
CP CY C +
Sbjct: 73 CPSSPNPRQGAECYKCGR 90
Score = 72.5 bits (170), Expect = 4e-14
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKE--EADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARN 199
C+ CN+TGH A +C E + CY C GH+ R+C SP+ CY C + GHIAR+
Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARD 97
Query: 200 CPEGGRES 223
C G++S
Sbjct: 98 CRTNGQQS 105
Score = 68.1 bits (159), Expect = 8e-13
Identities = 29/64 (45%), Positives = 35/64 (54%)
Frame = +2
Query: 11 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 190
G +R C+ C GH ARDC +CY C GH + EC Q+ D CY CN+ GHI
Sbjct: 110 GGHRSNMNCYACGSYGHQARDCTMGV-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHI 168
Query: 191 ARNC 202
A NC
Sbjct: 169 AVNC 172
Score = 64.5 bits (150), Expect = 9e-12
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEEADR-------------CYRCNGTGHIARECAQSPDEPS 160
RQ +C+KC R GH ARDC+ + CY C GH AR+C
Sbjct: 80 RQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG---VK 136
Query: 161 CYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
CY+C K GH + C + S Q CY CN+
Sbjct: 137 CYSCGKIGHRSFECQQA---SDGQLCYKCNQ 164
Score = 34.7 bits (76), Expect = 0.009
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 250 QVGHISRNC--PDGTKTCYVCGKPGHISRE 333
Q GH + C P KTCY CG GH+ R+
Sbjct: 43 QTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Score = 33.1 bits (72), Expect = 0.027
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 256 GHISRNCPDGTKTCYVCGKPGHISREXDE 342
GH +R+C G K CY CGK GH S E +
Sbjct: 125 GHQARDCTMGVK-CYSCGKIGHRSFECQQ 152
Score = 32.7 bits (71), Expect = 0.035
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +1
Query: 256 GHISRNCPDGTKT-----CYVCGKPGHISREXDEXG 348
GH+ R+CP CY CG+ GHI+R+ G
Sbjct: 67 GHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNG 102
Score = 29.1 bits (62), Expect = 0.43
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 250 QVGHISRNCPDGT--KTCYVCGKPGHIS 327
++GH S C + + CY C +PGHI+
Sbjct: 142 KIGHRSFECQQASDGQLCYKCNQPGHIA 169
Score = 28.3 bits (60), Expect = 0.76
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 256 GHISRNCPDGTKTCYVCGKPGHISREXDE 342
GH +R C G+ CY C + GH + E E
Sbjct: 26 GHQARECTKGS-ICYNCNQTGHKASECTE 53
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 50.8 bits (116), Expect = 1e-07
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +2
Query: 20 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 181
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 182 GHIARNCPE 208
GH++ C +
Sbjct: 133 GHLSGQCEQ 141
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEAD----RCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGH 187
CF+C H C ++ +C+ C+ GH++ +C Q+P P C C+ H
Sbjct: 102 CFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHH 161
Query: 188 IARNCPEGGRESAT 229
+A++C + ++ +
Sbjct: 162 LAKDCDQVNKDDVS 175
Score = 31.5 bits (68), Expect = 0.081
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCKE-------EADRCYRCNGTGHIARECAQ 142
KCF C+ GH + C++ + C C+ H+A++C Q
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 128 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 247
R Q + C+ C + GHI ++CPE + C+ C
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRC 105
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +1
Query: 247 QQVGHISRNCP---DGTKTCYVCGKPGH 321
+Q GHI ++CP D C+ CG H
Sbjct: 83 RQQGHIVQDCPEAKDNVSICFRCGSKEH 110
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 44.4 bits (100), Expect = 1e-05
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTG-HIARECAQSPDEPSCYNCNKTGHIARNCPEG 211
C C GH ++DC C C HI+ C P C NC GHIA C E
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE- 142
Query: 212 GRESATQTCYNCN 250
R+ + C C+
Sbjct: 143 PRKRGPRVCRTCH 155
Score = 29.1 bits (62), Expect = 0.43
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 259 HISRNCPDGTKTCYVCGKPGHISREXDE 342
HIS CP TK C CG GHI+ E
Sbjct: 116 HISVRCP-WTKKCMNCGLLGHIAARCSE 142
Score = 28.7 bits (61), Expect = 0.57
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEADR----CYRCNGTGHIAREC 136
+KC C GH A C E R C C+ H + C
Sbjct: 125 KKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 157
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 35.5 bits (78), Expect = 0.005
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 80 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCP 205
+E C C GH +C + + C +C GHIAR+CP
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 28.3 bits (60), Expect = 0.76
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +2
Query: 161 CYNCNKTGHIARNCPEGGRESATQTCYNC 247
C NC GH +CPE + C +C
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHC 339
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 259 HISRNCPDGTKTCYVCGKPGHISRE 333
H + CP TCY CGK H RE
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLRE 1818
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 59 HFARDCKEEADRCYRCNGTGHIAREC 136
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 35 CFKCNRTGHFARDCK 79
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 259 HISRNCPDGTKTCYVCGKPGHISRE 333
H + CP TCY CGK H RE
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLRE 1818
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 59 HFARDCKEEADRCYRCNGTGHIAREC 136
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 35 CFKCNRTGHFARDCK 79
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 29.5 bits (63), Expect = 0.33
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 196 ELSRGGAGVCDADLL*LQQVGHISRNCPDGTKTCYVCGK---PGHISREXDEXGTSRSHL 366
E G +CDA LL + ++R PDG + V + GH S + T R+H
Sbjct: 195 EFPNSGEVICDAPLLTVAPTLGLNRIHPDGKEASTVFKRIAFDGHTSLVLCKPLTGRTHQ 254
Query: 367 VSLTINYVYY 396
+ + + Y+ Y
Sbjct: 255 LRVHLQYLGY 264
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 17 NRQREKCFKCNRTGHFARDCKEEA 88
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = -2
Query: 257 PTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLP 78
P+CCS + + + P S CCS T+ + ++ CSNG+
Sbjct: 237 PSCCSQEKKSCCSSKKPSCCSQE-KKGCCSTEKTSCCSQEKKSCCTSEKPSCCSNGKSTV 295
Query: 77 C 75
C
Sbjct: 296 C 296
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 160
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 128 RECAQSPDEPS-----CYNCNKTGHIARNCP 205
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 319 HISREXDEXGTSRSHLVSLTINYVYYDATHG 411
H +E D +SR+ + T +YV+ D HG
Sbjct: 14 HAGQEPDAATSSRAVPIYATTSYVFRDCDHG 44
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 349 TSRSHLVSLTINYVYYDATHG 411
T+RS +++ +NY YYD G
Sbjct: 336 TARSKVINTLLNYAYYDIIKG 356
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 140 QSPDEPSCYNCNKTGHIARN--CPEGGR 217
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 27 VRSASSATAQDTLRGIARKRLTVA 98
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 245 SYSRSASQTPAPPRDSSVRCGPSCCSCN 162
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 445 IVCRAWRPLLIVRAWHH 395
I+ AWR L AWHH
Sbjct: 213 IIWSAWRKLPDAEAWHH 229
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 7.0
Identities = 17/77 (22%), Positives = 28/77 (36%)
Frame = +2
Query: 5 DSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTG 184
D +E KC+ T F ++C E+ D N G E + S +
Sbjct: 87 DQNSELSQENLTKCDTTHDFEKNCSEKTDSTSADNIAGFTILEALSATGLRSIRYAKELP 146
Query: 185 HIARNCPEGGRESATQT 235
++ R E+A +T
Sbjct: 147 NVKRILANDLLENAVKT 163
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 402 HARTISKGRHARHTITDYSTDAERRPRHRLK 494
H + + K + T+ DY+ ++RP HRLK
Sbjct: 250 HNKLVKKHKPLPSTL-DYTAYVKKRPTHRLK 279
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 234 VCVADSRPPSGQFRAMWP 181
V ++D RPP + RA WP
Sbjct: 302 VSISDYRPPKKRKRAAWP 319
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 14 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 112
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 21.4 bits (43), Expect(2) = 9.0
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +3
Query: 3 GIPVSIGNVRSASSATAQDTLRGIARKRLTVATD 104
G+P++ N + + T R + K + ATD
Sbjct: 73 GVPLASKNTNVRHTTASVSTRRALEEKSIIPATD 106
Score = 21.4 bits (43), Expect(2) = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 225 RRRPAITATSRPHLPQ-LSRRHQDV 296
RR+P++ +S P LPQ LS + V
Sbjct: 114 RRQPSVFNSSVPSLPQHLSTKSHSV 138
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 515 KSKSNLTLQSVARTPLC 465
K+KSN+ LQ +TP+C
Sbjct: 519 KAKSNVNLQYSPKTPIC 535
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 204 PRGGGSLRRRPAITATSRPHLPQLSRR 284
PR + PAI +TS+P LP S R
Sbjct: 272 PRPIAPVSMNPAINSTSKPPLPPPSSR 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,299
Number of Sequences: 5004
Number of extensions: 35674
Number of successful extensions: 184
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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