Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0193
(531 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 60 1e-09
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 54 5e-08
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 54 5e-08
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 51 5e-07
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 46 1e-05
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 46 1e-05
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 46 1e-05
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 44 5e-05
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 44 5e-05
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 44 5e-05
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 40 0.001
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 40 0.001
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 40 0.001
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 38 0.003
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 38 0.003
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 36 0.018
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 36 0.018
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 36 0.024
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 36 0.024
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 36 0.024
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 36 0.024
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 36 0.024
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 35 0.032
Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical pr... 34 0.055
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 34 0.073
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 0.39
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 30 0.90
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 30 1.2
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 1.2
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 30 1.2
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 29 1.6
AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical... 29 1.6
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 29 2.1
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical ... 29 2.7
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 28 3.6
U23174-2|AAM97992.1| 100|Caenorhabditis elegans Inhibitor of se... 28 3.6
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 28 3.6
Z83104-1|CAB54204.1| 573|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 27 6.3
U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 27 6.3
U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 27 6.3
Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical p... 27 8.4
U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family ... 27 8.4
U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family ... 27 8.4
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 27 8.4
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 27 8.4
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 27 8.4
AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical... 27 8.4
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 30/103 (29%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEAD------------RCYRCNGTGHIARECAQSPDE-------- 154
C+ C TGHF+RDC + CY C G GH +R+C + E
Sbjct: 37 CYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGG 96
Query: 155 ----------PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
CYNC ++GHI+R C E G + + CY C +
Sbjct: 97 RGGEGRSFGGQKCYNCGRSGHISRECTESG-SAEEKRCYQCQE 138
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 22/79 (27%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEE--------------------ADRCYRCNGTGHIARECAQS--P 148
C+ C GH++RDC +CY C +GHI+REC +S
Sbjct: 69 CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECTESGSA 128
Query: 149 DEPSCYNCNKTGHIARNCP 205
+E CY C +TGHI+R+CP
Sbjct: 129 EEKRCYQCQETGHISRDCP 147
Score = 54.4 bits (125), Expect = 5e-08
Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 36/109 (33%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKE-EAD----------RCYRCNGTGHIARECAQSPDEP-------- 157
C+KC + GH +R+C E+D CY C TGH +R+C +
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGG 65
Query: 158 --SCYNCNKTGHIARNCP----EG-----------GRESATQTCYNCNK 253
SCYNC GH +R+CP EG GR Q CYNC +
Sbjct: 66 GGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGR 114
Score = 54.0 bits (124), Expect = 6e-08
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 17/71 (23%)
Frame = +2
Query: 86 ADR-CYRCNGTGHIARECAQSPDE---------PSCYNCNKTGHIARNCPEGGRESATQ- 232
+DR CY+C GHI+R C + +CYNC +TGH +R+CP+GG +
Sbjct: 2 SDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRG 61
Query: 233 ------TCYNC 247
+CYNC
Sbjct: 62 GGGGGGSCYNC 72
Score = 54.0 bits (124), Expect = 6e-08
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 4/40 (10%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKE----EADRCYRCNGTGHIAREC 136
+KC+ C R+GH +R+C E E RCY+C TGHI+R+C
Sbjct: 107 QKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDC 146
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 11/46 (23%)
Frame = +1
Query: 247 QQVGHISRNCPDGT-----------KTCYVCGKPGHISREXDEXGT 351
QQ GHISRNCP+G TCY C + GH SR+ + G+
Sbjct: 10 QQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGS 55
Score = 34.3 bits (75), Expect = 0.055
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISREXDEXGTS 354
G + CY CG+ GHISRE E G++
Sbjct: 105 GGQKCYNCGRSGHISRECTESGSA 128
Score = 33.5 bits (73), Expect = 0.097
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +1
Query: 256 GHISRNCPDG----TKTCYVCGKPGHISRE 333
GHISR C + K CY C + GHISR+
Sbjct: 116 GHISRECTESGSAEEKRCYQCQETGHISRD 145
Score = 32.3 bits (70), Expect = 0.22
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 5 DSGFNRQREKCFKCNRTGHFARDCKEEAD 91
+SG + + ++C++C TGH +RDC + +
Sbjct: 124 ESG-SAEEKRCYQCQETGHISRDCPSQTN 151
Score = 31.5 bits (68), Expect = 0.39
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Frame = +1
Query: 205 RGGAGVCDADLL*LQQVGHISRNCPDGTK------------TCYVCGKPGHISRE 333
RGG G + Q+ GH SR+CP G +CY CG GH SR+
Sbjct: 29 RGGGG--GSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRD 81
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 289 KTCYVCGKPGHISR 330
+ CY C +PGHISR
Sbjct: 4 RNCYKCQQPGHISR 17
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 54.4 bits (125), Expect = 5e-08
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +2
Query: 26 REKCFKCNRTGHFARDCKE---EADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHI 190
R C C + GHFA DC + C C GH A +C Q P P C NC + GH
Sbjct: 592 RFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGHF 650
Query: 191 ARNCP-EGGRESATQTCYNC 247
A++C E R T+ C C
Sbjct: 651 AKDCQNERVRMEPTEPCRRC 670
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +2
Query: 35 CFKCNRTGHFARDC-KEEADR--CYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARN 199
C C GH +++C K + R C C GH A +C Q P P C NC GH A +
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQ-PRVPRGPCRNCGIEGHFAVD 630
Query: 200 CPEGGRESATQTCYNCNK 253
C + + C NC +
Sbjct: 631 CDQ--PKVPRGPCRNCGQ 646
Score = 40.3 bits (90), Expect = 8e-04
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 47 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPE 208
N+ G++ D E C+ C GHI++EC P P C NC + GH A +C +
Sbjct: 558 NQRGNW--DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ 610
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = +2
Query: 26 REKCFKCNRTGHFARDCKEEADR------CYRCNGTGHIARECAQSPDE 154
R C C + GHFA+DC+ E R C RC GH EC P +
Sbjct: 638 RGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKD 686
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 295 CYVCGKPGHISREXDEXGTSR 357
C+ CG+ GHIS+E D+ R
Sbjct: 572 CHNCGEEGHISKECDKPKVPR 592
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 54.4 bits (125), Expect = 5e-08
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +2
Query: 26 REKCFKCNRTGHFARDCKE---EADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHI 190
R C C + GHFA DC + C C GH A +C Q P P C NC + GH
Sbjct: 592 RFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGHF 650
Query: 191 ARNCP-EGGRESATQTCYNC 247
A++C E R T+ C C
Sbjct: 651 AKDCQNERVRMEPTEPCRRC 670
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +2
Query: 35 CFKCNRTGHFARDC-KEEADR--CYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARN 199
C C GH +++C K + R C C GH A +C Q P P C NC GH A +
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQ-PRVPRGPCRNCGIEGHFAVD 630
Query: 200 CPEGGRESATQTCYNCNK 253
C + + C NC +
Sbjct: 631 CDQ--PKVPRGPCRNCGQ 646
Score = 40.3 bits (90), Expect = 8e-04
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 47 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPE 208
N+ G++ D E C+ C GHI++EC P P C NC + GH A +C +
Sbjct: 558 NQRGNW--DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ 610
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = +2
Query: 26 REKCFKCNRTGHFARDCKEEADR------CYRCNGTGHIARECAQSPDE 154
R C C + GHFA+DC+ E R C RC GH EC P +
Sbjct: 638 RGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKD 686
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 295 CYVCGKPGHISREXDEXGTSR 357
C+ CG+ GHIS+E D+ R
Sbjct: 572 CHNCGEEGHISKECDKPKVPR 592
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 51.2 bits (117), Expect = 5e-07
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADR------CYRCNGTGHIARECAQS-----PDEPSCYNCNKT 181
CFKC H +CK++ + C+ C GHI+R+C Q+ PD C C
Sbjct: 256 CFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGHISRDCHQNVNGVYPDGGCCNVCGAN 315
Query: 182 GHIARNCPEGGRESA 226
H+ R+CPE + A
Sbjct: 316 THLRRDCPELAAQKA 330
Score = 33.9 bits (74), Expect = 0.073
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Frame = +2
Query: 32 KCFKCNRTGHFAR-DCKEEADRCYRCNGTGHIARECAQ---SPDEPSCYNCNKTGHIARN 199
K +K T R D K C+ C GH +C + S + C+ C H
Sbjct: 209 KRWKTRETRRIGRQDQKITGSACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHE 268
Query: 200 CPEGG-RESATQTCYNCNK 253
C + G + TC+ C +
Sbjct: 269 CKKKGVKGFPYATCFVCKQ 287
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +1
Query: 247 QQVGHISRNC--------PDGTKTCYVCGKPGHISREXDEXGTSRS 360
+QVGHISR+C PDG C VCG H+ R+ E ++
Sbjct: 286 KQVGHISRDCHQNVNGVYPDG-GCCNVCGANTHLRRDCPELAAQKA 330
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 53 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 208
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 53 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 208
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 8 SGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 187
SGF + F F + + +C+ C G GH + EC + P C+NC + GH
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGH 483
Query: 188 IARNCP 205
+ CP
Sbjct: 484 RSNECP 489
Score = 42.3 bits (95), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 289
Score = 42.3 bits (95), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 403
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 11 GFNRQRE--KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 157
G N +R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 445 GNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 494
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 142
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 142
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +1
Query: 247 QQVGHISRNCPDGTK-----TCYVCGKPGHISREXDE 342
QQ GH S +CP+ K CY C +PGH SR+ E
Sbjct: 263 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +1
Query: 247 QQVGHISRNCPDGTK-----TCYVCGKPGHISREXDE 342
QQ GH S +CP+ K CY C +PGH SR+ E
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 35.5 bits (78), Expect = 0.024
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEEADRCYRCNG-------------TGHIARECAQSPDE-- 154
R+ C+ C + GH +RDC EE NG G A + +
Sbjct: 393 REPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGP 452
Query: 155 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
C+NC GH + CPE R C+NC +
Sbjct: 453 MKCFNCKGEGHRSAECPEPPR-----GCFNCGE 480
Score = 33.5 bits (73), Expect = 0.097
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 GHISRNCPDGTKTCYVCGKPGHISRE 333
GH S CP+ + C+ CG+ GH S E
Sbjct: 462 GHRSAECPEPPRGCFNCGEQGHRSNE 487
Score = 30.3 bits (65), Expect = 0.90
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEE 85
R+ C+ C + GH +RDC EE
Sbjct: 279 REPRVCYNCQQPGHNSRDCPEE 300
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 53 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 208
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 53 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 208
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 8 SGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 187
SGF + F F + + +C+ C G GH + EC + P C+NC + GH
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGH 483
Query: 188 IARNCP 205
+ CP
Sbjct: 484 RSNECP 489
Score = 42.3 bits (95), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 289
Score = 42.3 bits (95), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 403
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 11 GFNRQRE--KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 157
G N +R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 445 GNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 494
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 142
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 142
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +1
Query: 247 QQVGHISRNCPDGTK-----TCYVCGKPGHISREXDE 342
QQ GH S +CP+ K CY C +PGH SR+ E
Sbjct: 263 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +1
Query: 247 QQVGHISRNCPDGTK-----TCYVCGKPGHISREXDE 342
QQ GH S +CP+ K CY C +PGH SR+ E
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 35.5 bits (78), Expect = 0.024
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEEADRCYRCNG-------------TGHIARECAQSPDE-- 154
R+ C+ C + GH +RDC EE NG G A + +
Sbjct: 393 REPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGP 452
Query: 155 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
C+NC GH + CPE R C+NC +
Sbjct: 453 MKCFNCKGEGHRSAECPEPPR-----GCFNCGE 480
Score = 33.5 bits (73), Expect = 0.097
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 GHISRNCPDGTKTCYVCGKPGHISRE 333
GH S CP+ + C+ CG+ GH S E
Sbjct: 462 GHRSAECPEPPRGCFNCGEQGHRSNE 487
Score = 30.3 bits (65), Expect = 0.90
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEE 85
R+ C+ C + GH +RDC EE
Sbjct: 279 REPRVCYNCQQPGHNSRDCPEE 300
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 53 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 208
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 53 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 208
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 8 SGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 187
SGF + F F + + +C+ C G GH + EC + P C+NC + GH
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGH 483
Query: 188 IARNCP 205
+ CP
Sbjct: 484 RSNECP 489
Score = 42.3 bits (95), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 289
Score = 42.3 bits (95), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 403
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 11 GFNRQRE--KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 157
G N +R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 445 GNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 494
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 142
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 142
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +1
Query: 247 QQVGHISRNCPDGTK-----TCYVCGKPGHISREXDE 342
QQ GH S +CP+ K CY C +PGH SR+ E
Sbjct: 263 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 35.5 bits (78), Expect = 0.024
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +1
Query: 247 QQVGHISRNCPDGTK-----TCYVCGKPGHISREXDE 342
QQ GH S +CP+ K CY C +PGH SR+ E
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 35.5 bits (78), Expect = 0.024
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEEADRCYRCNG-------------TGHIARECAQSPDE-- 154
R+ C+ C + GH +RDC EE NG G A + +
Sbjct: 393 REPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGP 452
Query: 155 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
C+NC GH + CPE R C+NC +
Sbjct: 453 MKCFNCKGEGHRSAECPEPPR-----GCFNCGE 480
Score = 33.5 bits (73), Expect = 0.097
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 GHISRNCPDGTKTCYVCGKPGHISRE 333
GH S CP+ + C+ CG+ GH S E
Sbjct: 462 GHRSAECPEPPRGCFNCGEQGHRSNE 487
Score = 30.3 bits (65), Expect = 0.90
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEE 85
R+ C+ C + GH +RDC EE
Sbjct: 279 REPRVCYNCQQPGHNSRDCPEE 300
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 44.4 bits (100), Expect = 5e-05
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 92 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 205
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 11 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 142
G + CF C + GH + DC KE R CY C GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 41.9 bits (94), Expect = 3e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 11 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 157
G R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 236 GEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 80 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 208
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +1
Query: 211 GAGVCDADLL*LQQVGHISRNCPDGTK-----TCYVCGKPGHISREXDE 342
G G + + QQ GH S +CP+ K CY C +PGH SRE E
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 33.5 bits (73), Expect = 0.097
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 GHISRNCPDGTKTCYVCGKPGHISRE 333
GH S CP+ + C+ CG+ GH S E
Sbjct: 251 GHRSAECPEPPRGCFNCGEQGHRSNE 276
Score = 32.7 bits (71), Expect = 0.17
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEEAD-RCYRCNGTGHIARECAQSPDEP------------- 157
R+ C+ C + GH +R+C EE R R G G A ++
Sbjct: 180 REPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEER 239
Query: 158 ---SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
C+NC GH + CPE R C+NC +
Sbjct: 240 GPMKCFNCKGEGHRSAECPEPPR-----GCFNCGE 269
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 44.4 bits (100), Expect = 5e-05
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 92 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 205
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 11 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 142
G + CF C + GH + DC KE R CY C GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 41.9 bits (94), Expect = 3e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 11 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 157
G R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 236 GEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 80 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 208
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +1
Query: 211 GAGVCDADLL*LQQVGHISRNCPDGTK-----TCYVCGKPGHISREXDE 342
G G + + QQ GH S +CP+ K CY C +PGH SRE E
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 33.5 bits (73), Expect = 0.097
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 GHISRNCPDGTKTCYVCGKPGHISRE 333
GH S CP+ + C+ CG+ GH S E
Sbjct: 251 GHRSAECPEPPRGCFNCGEQGHRSNE 276
Score = 32.7 bits (71), Expect = 0.17
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEEAD-RCYRCNGTGHIARECAQSPDEP------------- 157
R+ C+ C + GH +R+C EE R R G G A ++
Sbjct: 180 REPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEER 239
Query: 158 ---SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
C+NC GH + CPE R C+NC +
Sbjct: 240 GPMKCFNCKGEGHRSAECPEPPR-----GCFNCGE 269
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 44.4 bits (100), Expect = 5e-05
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 92 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 205
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 11 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 142
G + CF C + GH + DC KE R CY C GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 41.9 bits (94), Expect = 3e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 11 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 157
G R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 236 GEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 80 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 208
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +1
Query: 211 GAGVCDADLL*LQQVGHISRNCPDGTK-----TCYVCGKPGHISREXDE 342
G G + + QQ GH S +CP+ K CY C +PGH SRE E
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 33.5 bits (73), Expect = 0.097
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 GHISRNCPDGTKTCYVCGKPGHISRE 333
GH S CP+ + C+ CG+ GH S E
Sbjct: 251 GHRSAECPEPPRGCFNCGEQGHRSNE 276
Score = 32.7 bits (71), Expect = 0.17
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 17/95 (17%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEEAD-RCYRCNGTGHIARECAQSPDEP------------- 157
R+ C+ C + GH +R+C EE R R G G A ++
Sbjct: 180 REPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEER 239
Query: 158 ---SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
C+NC GH + CPE R C+NC +
Sbjct: 240 GPMKCFNCKGEGHRSAECPEPPR-----GCFNCGE 269
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 29 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 193
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 629 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 687
Query: 194 RNCPE 208
NCP+
Sbjct: 688 WNCPK 692
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEADR-CYRCNGTGHIARECAQSPDEPS 160
+KC +C ++G C + +R C+RCN GHIA C + + S
Sbjct: 654 QKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTS 698
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 8 SGFNRQREKCFKCNRTGHFARDCKEE 85
S F + CF+CN GH A +C ++
Sbjct: 668 SCFKLKNRACFRCNEMGHIAWNCPKK 693
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 29 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 193
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 532 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 590
Query: 194 RNCPE 208
NCP+
Sbjct: 591 WNCPK 595
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEADR-CYRCNGTGHIARECAQSPDEPS 160
+KC +C ++G C + +R C+RCN GHIA C + + S
Sbjct: 557 QKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTS 601
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 8 SGFNRQREKCFKCNRTGHFARDCKEE 85
S F + CF+CN GH A +C ++
Sbjct: 571 SCFKLKNRACFRCNEMGHIAWNCPKK 596
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 29 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 193
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 543 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 601
Query: 194 RNCPE 208
NCP+
Sbjct: 602 WNCPK 606
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEADR-CYRCNGTGHIARECAQSPDEPS 160
+KC +C ++G C + +R C+RCN GHIA C + + S
Sbjct: 568 QKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTS 612
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 8 SGFNRQREKCFKCNRTGHFARDCKEE 85
S F + CF+CN GH A +C ++
Sbjct: 582 SCFKLKNRACFRCNEMGHIAWNCPKK 607
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 38.3 bits (85), Expect = 0.003
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 139
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
Score = 33.9 bits (74), Expect = 0.073
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 86 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC---PEGGRESATQTCY 241
++ C+ C GH A EC S + C NC H A C + G + T+ Y
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANECASWSKNGVQEPTKVTY 253
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 38.3 bits (85), Expect = 0.003
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 139
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
Score = 33.9 bits (74), Expect = 0.073
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 86 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC---PEGGRESATQTCY 241
++ C+ C GH A EC S + C NC H A C + G + T+ Y
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANECASWSKNGVQEPTKVTY 253
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.018
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 56 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 211
G F + RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.018
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 56 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 211
G F + RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 35.5 bits (78), Expect = 0.024
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 92 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 220
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 156
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 32 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 142
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 152
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = +1
Query: 259 HISRNCPD---GTKTCYVCGKPGHIS 327
H +++CP+ K CY CG H+S
Sbjct: 122 HKAKSCPNVKTDAKVCYTCGSEEHVS 147
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.024
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 92 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 220
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 32 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 142
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = +1
Query: 259 HISRNCPD---GTKTCYVCGKPGHIS 327
H +++CP+ K CY CG H+S
Sbjct: 153 HKAKSCPNVKTDAKVCYTCGSEEHVS 178
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.024
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 92 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 220
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 32 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 142
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = +1
Query: 259 HISRNCPD---GTKTCYVCGKPGHIS 327
H +++CP+ K CY CG H+S
Sbjct: 153 HKAKSCPNVKTDAKVCYTCGSEEHVS 178
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.024
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 92 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 220
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
Score = 31.1 bits (67), Expect = 0.52
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 32 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 142
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = +1
Query: 259 HISRNCPD---GTKTCYVCGKPGHIS 327
H +++CP+ K CY CG H+S
Sbjct: 153 HKAKSCPNVKTDAKVCYTCGSEEHVS 178
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 35.5 bits (78), Expect = 0.024
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEG 211
+CY C + GHI+RNCP G
Sbjct: 5 NCYKCQQPGHISRNCPNG 22
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +1
Query: 247 QQVGHISRNCPDG 285
QQ GHISRNCP+G
Sbjct: 10 QQPGHISRNCPNG 22
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKE-EADRCYRCNGTGHI 124
C+KC + GH +R+C E+D R G G +
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGGV 36
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 86 ADR-CYRCNGTGHIAREC 136
+DR CY+C GHI+R C
Sbjct: 2 SDRNCYKCQQPGHISRNC 19
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 289 KTCYVCGKPGHISR 330
+ CY C +PGHISR
Sbjct: 4 RNCYKCQQPGHISR 17
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARN 199
C C+ GH A C + R N H + + PD+ + CY C + GH A
Sbjct: 206 CHNCHERGHKATTCPHLPGQT-RQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANR 264
Query: 200 CPEGGRESATQTCY 241
C +G + T +
Sbjct: 265 CHKGALAFLSNTAH 278
Score = 27.5 bits (58), Expect = 6.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCP 205
+C+NC++ GH A CP
Sbjct: 205 TCHNCHERGHKATTCP 220
>Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical
protein T23F6.1 protein.
Length = 160
Score = 34.3 bits (75), Expect = 0.055
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = -2
Query: 248 CSYSRSASQTPAPPRDSSVRCG-PSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLPCN 72
C QT P CG P C C V T C C+ +C+N C
Sbjct: 68 CGSMGMCGQTCCPSAPPPCSCGTPGCMQCVQQTVLVPVTTTTCCKCCQPVCTNA----CT 123
Query: 71 PSQSVLCGCT 42
CGCT
Sbjct: 124 NGGGCSCGCT 133
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 33.9 bits (74), Expect = 0.073
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 95 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN 250
CY+C GH++++C QS N KT H N E G T N
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNSGVTN-RKTEHSEVNTLEVGSGRQTSPSLRLN 363
Score = 32.3 bits (70), Expect = 0.22
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 155 PSCYNCNKTGHIARNCPEGGRES 223
P CY C GH++++CP+ S
Sbjct: 311 PYCYKCKVVGHVSKDCPQSSTNS 333
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 253 VGHISRNCPDGTKTCYVCG-KPGHISREXDEXGTSRSHLVSLTIN 384
VGH+S++CP + V K H E G+ R SL +N
Sbjct: 319 VGHVSKDCPQSSTNSGVTNRKTEHSEVNTLEVGSGRQTSPSLRLN 363
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 31.5 bits (68), Expect = 0.39
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 122 IARECAQ--SPDEPSCYNCNKTGHIARNCPE 208
+ R+C Q +P + C+ C++ GH +CP+
Sbjct: 1342 LLRKCNQGSAPTDRQCHQCHRIGHFVESCPQ 1372
Score = 30.7 bits (66), Expect = 0.68
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 211
+C +C+R GHF C + A AR+ S S Y N +G +N EG
Sbjct: 1356 QCHQCHRIGHFVESCPQRA--------LAKEARKRFGSNSTNSSYRSNDSGRGFKNGEEG 1407
Query: 212 G 214
G
Sbjct: 1408 G 1408
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 31.1 bits (67), Expect = 0.52
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Frame = -2
Query: 248 CSYSRSASQTPAPPRDSSVRCGPSCC-SCNMTA---RPGSVRTRALC-AQCRYICSNGQP 84
C S S P + V+C PSC +C + P +V+ C QC+ C QP
Sbjct: 109 CQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQCQQQCVQTQP 168
Query: 83 L-PCNPSQSVLC 51
+ C P C
Sbjct: 169 IQQCQPQCQQQC 180
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 30.3 bits (65), Expect = 0.90
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Frame = -2
Query: 248 CSYSRSASQTPAPPRDSSVRCGPSCC-SCNMTA---RPGSVRTRALC-AQCRYICSNGQP 84
C S S P + V+C PSC +C + P V+ C QC+ C QP
Sbjct: 109 CQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAPVQCVPQCQQQCQQQCVQTQP 168
Query: 83 L-PCNPSQSVLC 51
+ C P C
Sbjct: 169 IQQCQPQCQQQC 180
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = -2
Query: 257 PTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLP 78
P C + +S+ TP + S +C C S +++ P C+ C+ CS+ P
Sbjct: 54 PVCMAQCQSSCTTPICQQQCSNQCNQQCTSITISSGPS-------CSSCQSACSSACTTP 106
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = -2
Query: 248 CSYSRSASQTPAPPRDSSVRCGPSCCS-CNMTARPGSVRTRALCAQCRYICSNGQPLPCN 72
C R+ Q+ R P+C S C+ G T CR C G PCN
Sbjct: 466 CPCGRNTLQSLGVTRKKCTDMVPTCDSVCDKWLTCG---TPGKNHHCREKCHEGPCPPCN 522
Query: 71 PSQSVLCGC 45
+ SV+C C
Sbjct: 523 LNTSVICRC 531
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Frame = +2
Query: 95 CYRCNGTGHIARECAQSPDE-------PSCYNCNKTGHIARNCPE 208
C C G C+ +P P C+ C + GHI+ CP+
Sbjct: 581 CAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCPK 625
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE----PSCYNCNKTGH 187
+KC C+ G DC +++ +C C G R+C Q P C C H
Sbjct: 843 KKC-DCDAVGSLGNDCDKQSGQCV-CREKGIYGRQCNQCQPGFWGFPECRTCQCNDH 897
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 257 PTCCSYSRSASQTPAP-PRDSSVRCGPSCCSCNMTARPGSVRTRALC-AQCRYICSN 93
PTC + + P P PR S+ C PSC P V+ +LC QCR +C+N
Sbjct: 243 PTCIQQIQISVPLPPPAPRCDSM-CMPSC-------SPSCVQQYSLCPQQCRPMCTN 291
>AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical
protein Y51H4A.26 protein.
Length = 107
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 65 ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGH----IARNCPE 208
A+ C+ D + Y+ GH R+C D P Y C K G I +NCP+
Sbjct: 37 AKKCENYFDCQQYQTCIFGHCVRKCTSERDCPLGYICFKNGDGQRCIKKNCPK 89
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 80 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 187
E + C C+GT + + D SC++C ++GH
Sbjct: 252 EISTSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGH 287
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 20 RQREKCFKCNRTGHFARDCKEEA 88
R + +C C GH AR+CK++A
Sbjct: 571 RFKGQCHYCKNVGHMARNCKKKA 593
Score = 27.1 bits (57), Expect = 8.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 161 CYNCNKTGHIARNC 202
C+ C GH+ARNC
Sbjct: 576 CHYCKNVGHMARNC 589
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 257 PTCCSYSRSASQTPAPPRDSSVRCGPS 177
P+CC Y A P PP +S CGPS
Sbjct: 78 PSCCPYVPPA-PLPPPPPPASPCCGPS 103
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -2
Query: 131 RALCAQCRYICSNGQPLPCNPSQSVLCGC 45
R++C +C C N P P NP ++ C
Sbjct: 42 RSVCQECPSCCGNDGPQPFNPVFNIHFNC 70
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = -2
Query: 191 RCGPSCCSCNMTARPGSVRTRALCA-QCRYICSNGQPLPCNPSQSVLCGC 45
+C C T S + C+ C C+ + C P Q+ CGC
Sbjct: 263 QCQQQCQQQCQTRTTASQQCAPACSTSCNQSCNQPAQMACQPMQNSQCGC 312
>AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical
protein Y59E9AL.5 protein.
Length = 99
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = -2
Query: 182 PSCCSCNMTARPGSVRTRAL----CAQCRYICSNGQPLPCNPSQSVLCGCT 42
P+CC+C M + S T+ C C S + C+P S C CT
Sbjct: 49 PTCCACWMRRKKESTTTKVCVQDDCTTCS-CTSASRCSRCSPCCSGCCSCT 98
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 28.3 bits (60), Expect = 3.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 161 CYNCNKTGHIARNCPE 208
C++C + GHI+R CP+
Sbjct: 170 CFHCQEHGHISRMCPK 185
>U23174-2|AAM97992.1| 100|Caenorhabditis elegans Inhibitor of
serine protease likeprotein protein 1 protein.
Length = 100
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 284 PSGQLREMWPTCCSYSRSASQTPAP-PRDSSVRCGPSCCSC 165
P G L E+W C S +TP P PR C P+ C C
Sbjct: 41 PCG-LNEVWMVCSSCEEECGKTPQPCPR----ICQPARCQC 76
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -2
Query: 257 PTCCSYSRSASQTPAPPRDSSVRCGPSCCSCN--MTARPGSVRTRALCAQCRYICSNGQP 84
PTCCS + + P PP D G N + GS+ A+ + IC G P
Sbjct: 102 PTCCSCQQGPAGPPGPPGDDG-NGGQDGVRGNDGTDGKEGSLLESAIVNEPCIICPPGPP 160
Query: 83 LP 78
P
Sbjct: 161 GP 162
>Z83104-1|CAB54204.1| 573|Caenorhabditis elegans Hypothetical
protein F09B12.1a protein.
Length = 573
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 251 CCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQ 114
C S+ + Q AP + + C P CC C+ A+PG A A+
Sbjct: 17 CFPTSQRSYQYGAPTQQFAA-CTPQCCGCSQ-AQPGPQPAAAAAAR 60
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 208
E C NR+G + D + D C + + D C C K+ H+ +C
Sbjct: 60 ENCMDVNRSGTMSLDMARQCDMSSSCGSCQRMI-----TADSRQCTTCRKSYHL--SCDS 112
Query: 209 GGRESATQ-TCYNCNK 253
S C +C +
Sbjct: 113 SDVSSLNNFVCISCRR 128
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 208
E C NR+G + D + D C + + D C C K+ H+ +C
Sbjct: 60 ENCMDVNRSGTMSLDMARQCDMSSSCGSCQRMI-----TADSRQCTTCRKSYHL--SCDS 112
Query: 209 GGRESATQ-TCYNCNK 253
S C +C +
Sbjct: 113 SDVSSLNNFVCISCRR 128
>U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative
transcription factor LIM-4 protein.
Length = 355
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -2
Query: 296 HVLVPSGQLREMWPTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTAR 150
HV + RE+ P C S R+ T R + +C SCN R
Sbjct: 153 HVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKR 201
>U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family
protein 4 protein.
Length = 355
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -2
Query: 296 HVLVPSGQLREMWPTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTAR 150
HV + RE+ P C S R+ T R + +C SCN R
Sbjct: 153 HVTSTASSCRELGPKCASCDRTIQATDWVRRARNYVYHLACFSCNQCKR 201
>Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical
protein D1086.6 protein.
Length = 282
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/50 (26%), Positives = 17/50 (34%)
Frame = +2
Query: 104 CNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
C I A +P E C NK + R C G + C+K
Sbjct: 77 CQSACGIPHVLASNPTEEVCEKWNKCDDVKRQCAAAGGNYYAGANFQCSK 126
>U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform a protein.
Length = 95
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDCKEEADR----CYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 190
+ KC KC ++ + A + + C++CN + C +P E Y C K H
Sbjct: 7 EHPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELY-C-KQCHG 64
Query: 191 ARNCPEG 211
+ P+G
Sbjct: 65 RKFGPKG 71
>U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform b protein.
Length = 113
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDCKEEADR----CYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 190
+ KC KC ++ + A + + C++CN + C +P E Y C K H
Sbjct: 7 EHPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELY-C-KQCHG 64
Query: 191 ARNCPEG 211
+ P+G
Sbjct: 65 RKFGPKG 71
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = -2
Query: 236 RSASQTPAPPRDSSVRCG-PSCC--SCNMTARPGSVRTRALCAQ----CRYICS-NGQPL 81
R + T P D +++ +CC C ++ ++ + C CR + + NG+P+
Sbjct: 285 RKNAVTVVPKADVTMKSHIKACCVIGCEKSSNSKTIMCKTCCRSFHSGCREVETLNGKPI 344
Query: 80 PCNPSQSVLCG 48
P + +S +CG
Sbjct: 345 PDDQCESCVCG 355
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = -2
Query: 236 RSASQTPAPPRDSSVRCG-PSCC--SCNMTARPGSVRTRALCAQ----CRYICS-NGQPL 81
R + T P D +++ +CC C ++ ++ + C CR + + NG+P+
Sbjct: 285 RKNAVTVVPKADVTMKSHIKACCVIGCEKSSNSKTIMCKTCCRSFHSGCREVETLNGKPI 344
Query: 80 PCNPSQSVLCG 48
P + +S +CG
Sbjct: 345 PDDQCESCVCG 355
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Frame = -2
Query: 254 TCCSYSRSASQTPAPPRDSSVRCGPS-CCSCNMTARP--GSVRTRALCAQCRYICSNGQP 84
TCC A+ P PP P+ CC R S C R C P
Sbjct: 131 TCCPPPTPAAPPPPPPPPPPAPEAPTQCCGSQPYGRTPCRSGCPNGDCGCGRPCCYYQNP 190
Query: 83 LPCNPSQSVLC 51
CN Q C
Sbjct: 191 TCCNQGQKACC 201
>AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical
protein Y71H2AM.2 protein.
Length = 300
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -2
Query: 251 CCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYI 102
C S + PAPP VRC C+C + + S R CR +
Sbjct: 81 CHSCDEATPIRPAPPGKKYVRCP---CNCLLICKASSTRIACPRNNCRRV 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,917
Number of Sequences: 27780
Number of extensions: 251584
Number of successful extensions: 1252
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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