Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0193
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.28 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.6  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   3.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   3.4  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   4.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.9  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 155 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
           P C  C    H  + CP+G +   T    N  K
Sbjct: 76  PICGACGDIAHTVKYCPKGTKNPGTLATVNAFK 108


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 283 RRDSCGRCGRLVAVIAGLRRRLPPPL 206
           R +S G CGR  +        LP P+
Sbjct: 40  RSESSGYCGRRPSTFGSSNEALPQPI 65


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 283 RRDSCGRCGRLVAVIAGLRRRLPPPL 206
           R +S G CGR  +        LP P+
Sbjct: 40  RSESSGYCGRRPSTFGSSNEALPQPI 65


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 232 LRRRLPPPLGTVPCD 188
           LRR+L   LG  PCD
Sbjct: 48  LRRQLKCALGEAPCD 62


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 232 LRRRLPPPLGTVPCD 188
           LRR+L   LG  PCD
Sbjct: 48  LRRQLKCALGEAPCD 62


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 267 PQLSRRHQDVLRVRQARPHLARVRR 341
           P+L+ R   V     ARPH + V R
Sbjct: 110 PELTNRKSVVFHHDNARPHTSLVTR 134


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -3

Query: 271 CGRCGRLVAVIAGLRRRLPPPLGTVP 194
           C  C R    +A LRR L    G  P
Sbjct: 40  CSHCDRQFVQVANLRRHLRVHTGERP 65


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 267 PQLSRRHQDVLRVRQARPHLARVRR 341
           P+L+ R   V     ARPH + V R
Sbjct: 232 PELTNRKGVVFHHDNARPHTSLVTR 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,476
Number of Sequences: 438
Number of extensions: 2910
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)