Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0193
(531 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 71 5e-13
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 65 3e-11
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 63 1e-10
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 54 5e-08
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 54 5e-08
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 51 4e-07
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 6e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 6e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 6e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 6e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 6e-07
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 7e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 47 9e-06
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 46 2e-05
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 40 0.001
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.003
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.007
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 36 0.017
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 36 0.017
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 36 0.017
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.030
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.039
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 34 0.069
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.12
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.16
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.21
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.28
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.37
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.37
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.37
At3g31950.1 68416.m04046 hypothetical protein 31 0.48
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.64
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 31 0.64
At5g47430.1 68418.m05844 expressed protein 30 0.85
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 30 0.85
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 30 0.85
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 0.85
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 0.85
At3g54260.1 68416.m05997 expressed protein various predicted pro... 30 1.1
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.1
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 29 2.0
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 2.0
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 2.6
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 2.6
At4g06479.1 68417.m00885 hypothetical protein 29 2.6
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 28 3.4
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 3.4
At5g47390.1 68418.m05840 myb family transcription factor contain... 28 4.5
At4g06526.1 68417.m00938 hypothetical protein 28 4.5
At3g23410.1 68416.m02951 alcohol oxidase-related similar to long... 28 4.5
At2g45700.1 68415.m05682 sterile alpha motif (SAM) domain-contai... 28 4.5
At1g30660.1 68414.m03749 toprim domain-containing protein contai... 28 4.5
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 6.0
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 27 6.0
At2g20900.3 68415.m02465 diacylglycerol kinase, putative contain... 27 6.0
At2g20900.2 68415.m02464 diacylglycerol kinase, putative contain... 27 6.0
At2g20900.1 68415.m02463 diacylglycerol kinase, putative contain... 27 6.0
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 27 6.0
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 27 6.0
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 27 7.9
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 7.9
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 27 7.9
At5g01840.1 68418.m00103 ovate family protein 59% similar to ova... 27 7.9
At4g28130.1 68417.m04033 diacylglycerol kinase accessory domain-... 27 7.9
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 27 7.9
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 7.9
At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS cla... 27 7.9
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 27 7.9
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 27 7.9
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 70.9 bits (166), Expect = 5e-13
Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEE------------ADRCYRCNGTGHIARECAQSPDEPS--CYNC 172
C+ C GHFARDC ++ + CY C G GHIAR+CA + +PS CY C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQC 258
Query: 173 NKTGHIARNCPEGGRESA--TQTCYNCNK 253
+GH+AR+C + G CY C K
Sbjct: 259 GGSGHLARDCDQRGSGGGGNDNACYKCGK 287
Score = 67.7 bits (158), Expect = 5e-12
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Frame = +2
Query: 35 CFKCNRTGHFARDC--KEEADR-CYRCNGTGHIARECAQ-----SPDEPSCYNCNKTGHI 190
C+ C GH ARDC K + R CY+C G+GH+AR+C Q ++ +CY C K GH
Sbjct: 232 CYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHF 291
Query: 191 ARNC 202
AR C
Sbjct: 292 AREC 295
Score = 58.4 bits (135), Expect = 3e-09
Identities = 37/108 (34%), Positives = 45/108 (41%), Gaps = 31/108 (28%)
Frame = +2
Query: 17 NRQREKCFKCNRTGHFARDC------------KEEADRCYRCNGTGHIARECAQSP---- 148
+R E C+ C TGHFARDC K D CY C GH+AR+C Q
Sbjct: 128 SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNG 187
Query: 149 --------DEPSCYNCNKTGHIARNCPE----GGRES---ATQTCYNC 247
CY C GH AR+C + G S + TCY+C
Sbjct: 188 DQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSC 235
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 22/80 (27%)
Frame = +2
Query: 35 CFKCNRTGHFARDCK--------EEADR----CYRCNGTGHIARECAQSPD--------- 151
C+ C GH ++DC E R CY C TGH AR+C + +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 152 -EPSCYNCNKTGHIARNCPE 208
CY C GH+AR+C +
Sbjct: 162 GNDGCYTCGDVGHVARDCTQ 181
Score = 46.8 bits (106), Expect = 9e-06
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = +2
Query: 2 RDSGFNRQREK-CFKCNRTGHFARDCKEEA-------DRCYRCNGTGHIARECA 139
RD RQ + C++C +GH ARDC + + CY+C GH AREC+
Sbjct: 243 RDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +1
Query: 208 GGAGVCDADLL*LQQVGHISRNCP---DGTKTCYVCGKPGHISREXDEXGT 351
GG+G C + VGHI+R+C ++ CY CG GH++R+ D+ G+
Sbjct: 227 GGSGTCYS----CGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGS 273
Score = 35.9 bits (79), Expect = 0.017
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Frame = +2
Query: 161 CYNCNKTGHIARNCPEGG-------RESATQTCYNC 247
CYNC + GHI+++C GG R + CYNC
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNC 137
Score = 34.3 bits (75), Expect = 0.052
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 2 RDSGFNRQREKCFKCNRTGHFARDCKEEA 88
R SG C+KC + GHFAR+C A
Sbjct: 271 RGSGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Frame = +1
Query: 256 GHISRNCPD-------GTKTCYVCGKPGHISRE 333
GH++R+C CY CGK GH +RE
Sbjct: 262 GHLARDCDQRGSGGGGNDNACYKCGKEGHFARE 294
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 64.9 bits (151), Expect = 3e-11
Identities = 32/77 (41%), Positives = 37/77 (48%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 202
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 203 PEGGRESATQTCYNCNK 253
G C++C K
Sbjct: 109 SNEG------ICHSCGK 119
Score = 61.3 bits (142), Expect = 4e-10
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG- 211
C C GH A +C E+ RC+ C GH+A C+ +E C++C K+GH AR+C
Sbjct: 76 CNNCGLPGHIAAECTAES-RCWNCREPGHVASNCS---NEGICHSCGKSGHRARDCSNSD 131
Query: 212 GRESATQTCYNCNK 253
R + C NC K
Sbjct: 132 SRAGDLRLCNNCFK 145
Score = 60.5 bits (140), Expect = 7e-10
Identities = 25/59 (42%), Positives = 36/59 (61%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 211
C C + GH A DC + C C +GHIAR+C ++P C C+ +GH+AR+CP+G
Sbjct: 140 CNNCFKQGHLAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKG 194
Score = 30.7 bits (66), Expect = 0.64
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 256 GHISRNCPDGTKTCYVCGKPGHISRE 333
GH +R+C + C CG PGHI+ E
Sbjct: 64 GHFARDCSN-VSVCNNCGLPGHIAAE 88
Score = 30.3 bits (65), Expect = 0.85
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 247 QQVGHISRNCPDGTKTCYVCGKPGHISRE 333
++ GH++ NC + C+ CGK GH +R+
Sbjct: 99 REPGHVASNCSN-EGICHSCGKSGHRARD 126
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 256 GHISRNCPDGTKTCYVCGKPGHISREXDEXGTSRS 360
GHI+ C ++ C+ C +PGH++ G S
Sbjct: 83 GHIAAECTAESR-CWNCREPGHVASNCSNEGICHS 116
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEE----ADRCYRCN-------GTGHIARECAQSPDEPSCYNCNKT 181
C C+ +GH AR C + +DR R G ++R+ C+NC
Sbjct: 178 CNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGR 237
Query: 182 GHIARNCP 205
GH A CP
Sbjct: 238 GHRAYECP 245
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEA--------DRCYRCNGTGHIARECAQSPDEP------SCYNC 172
C+ C GHFARDC++ CY C G GHIA+ C +CY C
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYEC 257
Query: 173 NKTGHIARNCPEGGRESA-----TQTCYNCNK 253
TGH+AR+C G S+ + C+ C K
Sbjct: 258 GGTGHLARDCDRRGSGSSGGGGGSNKCFICGK 289
Score = 56.4 bits (130), Expect = 1e-08
Identities = 32/96 (33%), Positives = 40/96 (41%), Gaps = 25/96 (26%)
Frame = +2
Query: 35 CFKCNRTGHFARDCK---------------EEADRCYRCNGTGHIARECAQS------PD 151
C+ C GH A+DC+ D CY C G GH AR+C Q+
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 152 EPSCYNCNKTGHIARNC----PEGGRESATQTCYNC 247
+CY C GHIA+ C P GG + CY C
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRACYEC 257
Score = 52.0 bits (119), Expect = 2e-07
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 27/99 (27%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCKEEAD-----------RCYRCNGTGHIAREC-------------A 139
+C+ C GHFARDC++ CY C GH+A++C
Sbjct: 131 ECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 140 QSPDEPSCYNCNKTGHIARNCPEGGRES---ATQTCYNC 247
+ CY C GH AR+C + G + TCY C
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTC 229
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADR--------CYRCNGTGHIARECAQSPDEPS--------CY 166
C+ C GH A+ C + CY C GTGH+AR+C + S C+
Sbjct: 226 CYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCF 285
Query: 167 NCNKTGHIARNC 202
C K GH AR C
Sbjct: 286 ICGKEGHFAREC 297
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 35/106 (33%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEAD----------------RCYRCNGTGHIARECAQSPDEPS-- 160
CF C GH A+DC + CY C GH AR+C QS S
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 161 -------CYNCNKTGHIARNC----------PEGGRESATQTCYNC 247
CY+C + GH+A++C GGR S CY C
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMC 201
Score = 34.3 bits (75), Expect = 0.052
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Frame = +1
Query: 253 VGHISRNCPD--------GTKTCYVCGKPGHISREXDEXGTSRS 360
VGHI++ C G + CY CG GH++R+ D G+ S
Sbjct: 232 VGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSS 275
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 8 SGFNRQREKCFKCNRTGHFARDCKEEA 88
SG KCF C + GHFAR+C A
Sbjct: 275 SGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 10/36 (27%)
Frame = +1
Query: 256 GHISRNCP----------DGTKTCYVCGKPGHISRE 333
GH++R+C G+ C++CGK GH +RE
Sbjct: 261 GHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFARE 296
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 8/34 (23%)
Frame = +1
Query: 253 VGHISRNCPD--------GTKTCYVCGKPGHISR 330
VGH +R+C G TCY CG GHI++
Sbjct: 204 VGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAK 237
Score = 29.5 bits (63), Expect = 1.5
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEG 211
+C+NC + GH+A++C G
Sbjct: 95 NCFNCGEVGHMAKDCDGG 112
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISREXDEXGTSRS 360
G CY+CG GH +R+ + G S
Sbjct: 128 GEGECYMCGDVGHFARDCRQSGGGNS 153
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 54.4 bits (125), Expect = 5e-08
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Frame = +2
Query: 23 QREK-CFKCNRTGHFARDCKE------EADRCYRCNGTGHIARECAQSPDE-----PSCY 166
+R K C +C R GH ++C E E CY C TGH C ++ SC+
Sbjct: 96 ERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCF 155
Query: 167 NCNKTGHIARNCPE 208
C GHI++NCPE
Sbjct: 156 ICKGQGHISKNCPE 169
Score = 53.6 bits (123), Expect = 8e-08
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 181
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 182 GHIARNCPEGGRESATQ--TCYNC 247
GH +CP + T+ +C+ C
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFIC 157
Score = 44.4 bits (100), Expect = 5e-05
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQS-----PDEPSCY 166
+++ C+ C TGH C + C+ C G GHI++ C ++ P C
Sbjct: 123 EKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGCCK 182
Query: 167 NCNKTGHIARNCPEGGRESATQ 232
C H+ ++CP+ + + Q
Sbjct: 183 VCGSVAHLVKDCPDKFNQESAQ 204
Score = 33.9 bits (74), Expect = 0.069
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 178
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 179 TGHIARNCPEGGRESATQTCYNCNK 253
HIA+ CPE + C C +
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRR 106
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Frame = +1
Query: 256 GHISRNCPDGTK-------TCYVCGKPGHISRE 333
GHIS+NCP+ C VCG H+ ++
Sbjct: 161 GHISKNCPENKHGIYPMGGCCKVCGSVAHLVKD 193
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Frame = +1
Query: 256 GHISRNCPDGT------KTCYVCGKPGH 321
GH +NCP+ K CY CG GH
Sbjct: 108 GHSLKNCPEKNNESSEKKLCYNCGDTGH 135
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 54.4 bits (125), Expect = 5e-08
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 11/54 (20%)
Frame = +2
Query: 17 NRQREKCFKCNRTGHFARDC-----------KEEADRCYRCNGTGHIARECAQS 145
+R+ +C++C GHFAR+C +E CYRCNG+GH AREC S
Sbjct: 321 SREASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 54.0 bits (124), Expect = 6e-08
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 205
C+ C GH + +C R C+ C H A++C++ D CY C KTGH A++CP
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCP 224
Query: 206 EGGRE-SATQTCYNC 247
+ + S C C
Sbjct: 225 DKYKNGSKGAVCLRC 239
Score = 52.0 bits (119), Expect = 2e-07
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +2
Query: 83 EADRCYRCNGTGHIARECAQSPD---------EPSCYNCNKTGHIARNCPEGGRES 223
EA CYRC GH AREC S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG- 211
C++C + GH C + + S + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSS 344
Query: 212 ------GRESATQTCYNCN 250
GRES T CY CN
Sbjct: 345 SISTSHGRESQT-LCYRCN 362
Score = 34.3 bits (75), Expect = 0.052
Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADR-------CYRCNGTGHIARECAQSPDEP-----SCYNCNK 178
C +C GH CK E + CY C GH+ C P SCY C +
Sbjct: 236 CLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHL---CCVEPGNSLSWAVSCYRCGQ 292
Query: 179 TGHIARNCPEGGRES 223
GH C ES
Sbjct: 293 LGHSGLACGRHYEES 307
Score = 31.9 bits (69), Expect = 0.28
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS 160
C++CN +GHFAR+C + R T + + + E S
Sbjct: 358 CYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENS 399
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGGRESATQTCYNC 247
SCY+C + GH + NCP + + C+ C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFIC 194
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +1
Query: 256 GHISRNCPDGT---KTCYVCGKPGHISRE 333
GH S NCP T K C++CG H +++
Sbjct: 175 GHTSFNCPTPTKRRKPCFICGSLEHGAKQ 203
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 51.2 bits (117), Expect = 4e-07
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 36/109 (33%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADR-----------CYRCNGTGHIAREC-AQSPD---EP---- 157
C+KC + GH+ARDC ++D C++C GH +R+C AQS + EP
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 158 ------SCYNCNKTGHIARNCP--------EGGR---ESATQTCYNCNK 253
CY C K GH +R+C + G+ S+T CY C K
Sbjct: 299 SSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGK 347
Score = 44.0 bits (99), Expect = 6e-05
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 211
+C+KC + GH++RDC ++ +G A+ + + D CY C K GH +R+C
Sbjct: 305 ECYKCGKQGHWSRDCTGQSSNQQFQSGQ---AKSTSSTGD---CYKCGKAGHWSRDCTSP 358
Query: 212 GRESAT 229
+ + T
Sbjct: 359 AQTTNT 364
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 295 CYVCGKPGHISRE 333
C+ CGKPGH SR+
Sbjct: 270 CFKCGKPGHWSRD 282
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 286 TKTCYVCGKPGHISRE 333
T CY CGK GH SR+
Sbjct: 339 TGDCYKCGKAGHWSRD 354
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 148
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 5e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 92 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 202
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 31.9 bits (69), Expect = 0.28
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 146 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
P C+NC GH AR+C G ++ CY C +
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGE 128
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 256 GHISRNCPDGT--KTCYVCGKPGHISR 330
GH +R+C G CY CG+ GHI R
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIER 134
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 2 RDSGFNRQREKCFKCNRTGHFARDCK 79
RD + KC++C GH R+CK
Sbjct: 112 RDCTAGDWKNKCYRCGERGHIERNCK 137
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 148
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 5e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 92 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 202
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 31.9 bits (69), Expect = 0.28
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 146 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
P C+NC GH AR+C G ++ CY C +
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGE 87
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 256 GHISRNCPDGT--KTCYVCGKPGHISR 330
GH +R+C G CY CG+ GHI R
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIER 93
Score = 29.9 bits (64), Expect = 1.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 2 RDSGFNRQREKCFKCNRTGHFARDCK 79
RD + KC++C GH R+CK
Sbjct: 71 RDCTAGDWKNKCYRCGERGHIERNCK 96
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 148
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 86 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 244
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 31.5 bits (68), Expect = 0.37
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 146 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
P C+NC GH AR+C G ++ CY C +
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKN---KCYRCGE 87
Score = 30.7 bits (66), Expect = 0.64
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 2 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 103
RD + KC++C GH R+CK + R
Sbjct: 71 RDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRR 104
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 256 GHISRNCPDGT--KTCYVCGKPGHISR 330
GH +R+C G CY CG+ GHI R
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIER 93
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 148
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 86 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 244
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 31.5 bits (68), Expect = 0.37
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 146 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
P C+NC GH AR+C G ++ CY C +
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKN---KCYRCGE 98
Score = 30.7 bits (66), Expect = 0.64
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 2 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 103
RD + KC++C GH R+CK + R
Sbjct: 82 RDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRR 115
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 256 GHISRNCPDGT--KTCYVCGKPGHISR 330
GH +R+C G CY CG+ GHI R
Sbjct: 78 GHWARDCTAGDWKNKCYRCGERGHIER 104
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 6e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 148
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 86 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 244
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 31.5 bits (68), Expect = 0.37
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 146 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
P C+NC GH AR+C G ++ CY C +
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKN---KCYRCGE 128
Score = 30.7 bits (66), Expect = 0.64
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 2 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 103
RD + KC++C GH R+CK + R
Sbjct: 112 RDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRR 145
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 256 GHISRNCPDGT--KTCYVCGKPGHISR 330
GH +R+C G CY CG+ GHI R
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIER 134
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.2 bits (107), Expect = 7e-06
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPE 208
CFKC GH AR+C + G G SCY+C ++GH AR+C
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCTS 197
Query: 209 GG 214
GG
Sbjct: 198 GG 199
Score = 32.7 bits (71), Expect = 0.16
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISREXDEXG 348
G +C+ CG+PGH++RE + G
Sbjct: 134 GDNSCFKCGEPGHMARECSQGG 155
Score = 32.7 bits (71), Expect = 0.16
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPEGG 214
SC+ C + GH+AR C +GG
Sbjct: 137 SCFKCGEPGHMARECSQGG 155
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISREXDEXG 348
G +CY CG+ GH +R+ G
Sbjct: 178 GGLSCYSCGESGHFARDCTSGG 199
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 46.8 bits (106), Expect = 9e-06
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Frame = +2
Query: 11 GFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIARECAQSPDE 154
G R C+KC GH ARDC E Y G G+
Sbjct: 123 GGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGG 182
Query: 155 PSCYNCNKTGHIARNCPEGGR 217
SCY+C ++GH AR+C GGR
Sbjct: 183 GSCYSCGESGHFARDCTSGGR 203
Score = 33.1 bits (72), Expect = 0.12
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISREXDEXG 348
G CY CG+PGH++R+ E G
Sbjct: 127 GGSDCYKCGEPGHMARDCSEGG 148
Score = 27.1 bits (57), Expect(2) = 0.11
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISREXDEXG 348
G +CY CG+ GH +R+ G
Sbjct: 181 GGGSCYSCGESGHFARDCTSGG 202
Score = 25.0 bits (52), Expect(2) = 0.11
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 205 RGGAGVCDADLL*LQQVGHISRNCPDG 285
RGG G +D + GH++R+C +G
Sbjct: 121 RGGGGRGGSDCYKCGEPGHMARDCSEG 147
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 166
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 167 NCNKTGHIARNCPEGGRESATQTCYNCNK 253
C + GH C +S + +C+ C +
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGR 109
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCKEEADR------CYRCNGTGHIARECAQSPDE---PSCYNCNKTG 184
KC+ CN GH C E CYRC GH C + D+ PSC+ C + G
Sbjct: 54 KCYVCNSLGHLC--CIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREG 111
Query: 185 HIARNC 202
H C
Sbjct: 112 HFEHQC 117
Score = 41.5 bits (93), Expect = 3e-04
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +2
Query: 80 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 241
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 242 NCNK 253
C +
Sbjct: 81 RCGQ 84
Score = 33.9 bits (74), Expect = 0.069
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Frame = +2
Query: 56 GHFARDCKEEADRCYR--CNGTGHIARECAQSPDEPS------CYNCNKTGHIARNCPEG 211
GHF C + + C++ G I+ + CY C GHIAR+CP
Sbjct: 154 GHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNS 213
Query: 212 GR 217
+
Sbjct: 214 SQ 215
Score = 31.9 bits (69), Expect = 0.28
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKT-----GHIARN 199
CF C R GHF C C+ + + EC Q PD S T GH
Sbjct: 104 CFICGREGHFEHQCHNSFSVCFPEDSS---EDEC-QGPDSSSVRFQENTREEEEGHFEHQ 159
Query: 200 CPE 208
CP+
Sbjct: 160 CPD 162
Score = 28.3 bits (60), Expect = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 26 REKCFKCNRTGHFARDC 76
R C++C GH ARDC
Sbjct: 194 RRLCYECKGKGHIARDC 210
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +1
Query: 247 QQVGHISRNCPDGTKTCY--VCGKPGHISREXDEXGTSR 357
++ GH CPD + C+ + + G IS TS+
Sbjct: 151 EEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSK 189
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +2
Query: 95 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNC 247
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWC 92
Score = 37.1 bits (82), Expect = 0.007
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 11/62 (17%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEAD------RCYRCNGTGHIARECA-----QSPDEPSCYNCNKT 181
C+KC + GHFAR C CY C+ GH + C Q + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 182 GH 187
H
Sbjct: 96 DH 97
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 149 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNK 253
D +CY C K GH AR+C + +A TCY C++
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSE 67
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +2
Query: 2 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 94
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 30.3 bits (65), Expect = 0.85
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 161 CYNCNKTGHIARNCP-EGGRE 220
C+ C K GH AR CP E R+
Sbjct: 120 CFKCGKPGHFARECPSESSRD 140
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISRE 333
G C+ CGKPGH +RE
Sbjct: 116 GGGDCFKCGKPGHFARE 132
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 95 CYRCNGTGHIAREC 136
C++C GH AREC
Sbjct: 120 CFKCGKPGHFAREC 133
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.007
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDC 76
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 122 IARECAQSP-DEPSCYNCNKTGHIARNCP 205
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +2
Query: 11 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 190
G + + KC C GH +R C++ C+G + E +C C K GH
Sbjct: 315 GISTRYHKCGICGERGHNSRTCRKPTGVNPSCSGEN--SGEDGVGKITYACGFCKKMGHN 372
Query: 191 ARNCP 205
R CP
Sbjct: 373 VRTCP 377
Score = 33.1 bits (72), Expect = 0.12
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 15/71 (21%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKE---EADRCYR---CNGTGHIARECAQSPD---------EPSCYN 169
C C + GH C E ADR +R C G GH R C +S C
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGI 325
Query: 170 CNKTGHIARNC 202
C + GH +R C
Sbjct: 326 CGERGHNSRTC 336
Score = 31.5 bits (68), Expect = 0.37
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKT 181
RD + QR K + AR E+ + + N R + + C NC +
Sbjct: 213 RDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQE 272
Query: 182 GHIARNCPEGGRESATQ-TCYNC 247
GH CPE G + + C C
Sbjct: 273 GHRRHYCPELGTNADRKFRCRGC 295
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.9 bits (79), Expect = 0.017
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEAD 91
++CFKC R GH+ARDC D
Sbjct: 115 DECFKCRRPGHWARDCPSTGD 135
Score = 31.1 bits (67), Expect = 0.48
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 152 EPSCYNCNKTGHIARNCPEGG 214
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.64
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 56 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 154
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 35.9 bits (79), Expect = 0.017
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEAD 91
++CFKC R GH+ARDC D
Sbjct: 115 DECFKCRRPGHWARDCPSTGD 135
Score = 31.1 bits (67), Expect = 0.48
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 152 EPSCYNCNKTGHIARNCPEGG 214
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.64
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 56 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 154
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.030
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 205
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 113 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE 208
+G +A + + C+ C K GH R+C E
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLE 619
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.039
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDC 76
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.3 bits (70), Expect = 0.21
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 152 EPSCYNCNKTGHIARNCPEGG 214
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +1
Query: 283 GTKTCYVCGKPGHISREXDEXGTSRSHLV-SLTINYVYYDATHGR*AKDATRD 438
G C+ CG+ GH +R+ G R V + Y + GR + A RD
Sbjct: 124 GEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRD 176
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 89 DRCYRCNGTGHIAREC 136
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 33.9 bits (74), Expect = 0.069
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCK 79
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.1 bits (67), Expect = 0.48
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 92 RCYRCNGTGHIAREC 136
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 0.85
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 161 CYNCNKTGHIARNCPEGG 214
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +1
Query: 295 CYVCGKPGHISRE-XDEXGTSR 357
CY CG+ GH +RE + GT R
Sbjct: 101 CYECGETGHFARECRNRGGTGR 122
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.12
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEA 88
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 92 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 214
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.3 bits (70), Expect = 0.21
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCK 79
KC++C +GHFAR+C+
Sbjct: 97 KCYECGESGHFARECR 112
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 92 RCYRCNGTGHIAREC 136
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 28.7 bits (61), Expect = 2.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 161 CYNCNKTGHIARNCPEGG 214
CY C ++GH AR C G
Sbjct: 98 CYECGESGHFARECRSRG 115
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 295 CYVCGKPGHISREXDEXGTS 354
CY CG+ GH +RE G S
Sbjct: 98 CYECGESGHFARECRSRGGS 117
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.28
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDCK 79
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 122 IARECAQSPDEPS-CYNCNKTGHIARNC 202
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.37
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 152 EPSCYNCNKTGHIARNCPEGGRESATQ 232
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 95 CYRCNGTGHIAREC 136
CYRC GHIA+ C
Sbjct: 227 CYRCKQEGHIAKIC 240
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.37
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCK 79
KC++C GHFAR+C+
Sbjct: 90 KCYECGELGHFARECR 105
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 2 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 136
R +G+ + K R G R E +CY C GH AREC
Sbjct: 60 RKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 149 DEPSCYNCNKTGHIARNCPEG 211
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.37
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCK 79
KC++C GHFAR+C+
Sbjct: 90 KCYECGELGHFARECR 105
Score = 31.1 bits (67), Expect = 0.48
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 2 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 136
R +G+ + K R G R E +CY C GH AREC
Sbjct: 60 RKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 1.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 149 DEPSCYNCNKTGHIARNCPEG 211
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.48
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = +2
Query: 95 CYRCNGTGHIARECA-QSPDEP------SCYNCNKTGHIARNCP 205
C C T H+ +C SP P CY C GH++ CP
Sbjct: 287 CDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCP 330
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +2
Query: 26 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 136
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 30.7 bits (66), Expect = 0.64
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 35 CFKCNRTGHFARDC--KEEAD 91
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 0.85
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 161 CYNCNKTGHIARNC 202
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 95 CYRCNGTGHIAREC 136
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 265 SRNCPDGTKTCYVCGKPGHISREXDEXGTS 354
S D K CY C K GH++R+ TS
Sbjct: 916 SEETDDAVKICYRCKKVGHLARDCHGKETS 945
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 30.7 bits (66), Expect = 0.64
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN-C 202
C C+R H A + R C RCN R C+ C NC+ +GH +N
Sbjct: 25 CLSCDRNVHSANALSKRHSRTLVCERCNAQPASVR-CSDERVS-LCQNCDWSGHDGKNST 82
Query: 203 PEGGRESATQTCYN 244
+ T CY+
Sbjct: 83 TTSHHKRQTINCYS 96
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 101 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 214
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 80 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 214
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 149 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
D P C+NC H R CP SA + K
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQK 273
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 30.3 bits (65), Expect = 0.85
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +2
Query: 95 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 229
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 80 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 217
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 149 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
D P C+NC H R CP SA +K
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHK 228
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 166
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 0.85
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 80 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 217
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 149 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
D P C+NC H R CP SA +K
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHK 228
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 32 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 166
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At3g54260.1 68416.m05997 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 379
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +3
Query: 234 PAITATSRPHLPQLSRRHQDVLRVRQARPHL 326
P+++++++PH+PQ SR VLR + R +L
Sbjct: 286 PSLSSSTKPHVPQQSRVLNKVLRTMKYRVYL 316
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 77 KEEADRCYRCNGTGHIARECAQSP 148
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 2.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 35 CFKCNRTGHFARDC 76
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +2
Query: 68 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 244
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 245 C 247
C
Sbjct: 181 C 181
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 2.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 161 CYNCNKTGHIARNCP 205
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 14 FNRQREKCFKCNRTGHFARDCKEEADR 94
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 28.7 bits (61), Expect = 2.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 158 SCYNCNKTGHIARNCPE 208
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +2
Query: 95 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 202
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Frame = +2
Query: 26 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 136
+ C C+ T H +C ++ +CY C G GH++ C
Sbjct: 295 KRPCEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 122 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 253
++R+ ++S E +C+ C + GH +CP E + Y +
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQE 191
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 3.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 80 EEADRCYRCNGTGHIARECAQS 145
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 3.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 149 DEPSCYNCNKTGHIARNCPE 208
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 161 CYNCNKTGHIARNCPEGG 214
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +2
Query: 95 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 205
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 746
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 247 QQVGHISRNCPDGTKTCYVCGKPGHISREXDEXGTSRSHLV 369
+ +G N P + + CG G+ R+ D+ G+ R+ LV
Sbjct: 373 ENLGFNVENVPRNSSESHYCGSCGYGCRQGDKKGSDRTWLV 413
>At2g45700.1 68415.m05682 sterile alpha motif (SAM)
domain-containing protein similar to SNM1 protein [Mus
musculus] GI:7595835; contains Pfam profile PF00536: SAM
domain (Sterile alpha motif)
Length = 723
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = -2
Query: 257 PTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSV 138
P C Y + TP P D + C S C + P SV
Sbjct: 43 PRLCRYPGKENVTPPPSPDPDLFCSSSTPHCILDCIPSSV 82
>At1g30660.1 68414.m03749 toprim domain-containing protein contains
Pfam profile PF01751: Toprim domain
Length = 321
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 244 LQQVGHISRNCPDGTKTCYVCGK 312
L + G ++NCP G ++C +C K
Sbjct: 42 LSEQGIDAQNCPPGVRSCLICPK 64
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +2
Query: 104 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 205
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 29 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 136
E+C + + DC +CY C G GH++ C
Sbjct: 347 EQCLHPPQAMPYMVDCA----KCYSCGGVGHVSMYC 378
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Frame = +2
Query: 11 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP-----SCYNCN 175
GF R+R C+ C C+ C+ + A +P +P +CY
Sbjct: 1549 GFTRKRHNCYNCGLV------------HCHACSSKKALKAALAPTPGKPHRVCDACYTKL 1596
Query: 176 KTGHIARNCPEGGRESATQT 235
K G N R S T T
Sbjct: 1597 KAGESGYNSNVANRNSTTPT 1616
>At2g20900.3 68415.m02465 diacylglycerol kinase, putative contains
INTERPRO domain, IPR001206, DAG-kinase catalytic domain
Length = 491
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 268 GRCGRLVAVIAGLRRRLPPPLGTVP 194
G G L+ V+ L+ PPP+ TVP
Sbjct: 114 GTAGWLLGVVCDLKLSHPPPIATVP 138
>At2g20900.2 68415.m02464 diacylglycerol kinase, putative contains
INTERPRO domain, IPR001206, DAG-kinase catalytic domain
Length = 491
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 268 GRCGRLVAVIAGLRRRLPPPLGTVP 194
G G L+ V+ L+ PPP+ TVP
Sbjct: 114 GTAGWLLGVVCDLKLSHPPPIATVP 138
>At2g20900.1 68415.m02463 diacylglycerol kinase, putative contains
INTERPRO domain, IPR001206, DAG-kinase catalytic domain
Length = 509
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 268 GRCGRLVAVIAGLRRRLPPPLGTVP 194
G G L+ V+ L+ PPP+ TVP
Sbjct: 114 GTAGWLLGVVCDLKLSHPPPIATVP 138
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 148 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL 240
G +V+ LQ DGPH ++R G AD+L
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVL 608
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 74 CKEEADRCYRCNGTGHIARECA 139
C EE +R CNG G +A E A
Sbjct: 827 CHEENNRVMNCNGRGSVAGEMA 848
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 236 RSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLPCNPSQSV 57
RS + P D +V+ CC+C ++ S +T + QCR + G C PS
Sbjct: 1039 RSYEENSETPSDDAVKSDVCCCTC---SKSSSCKT--MKCQCR--ATKGS---CGPS--- 1085
Query: 56 LCGCT 42
CGC+
Sbjct: 1086 -CGCS 1089
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 116 GHIARECAQSP-DEPSCYNCNKTGHIARNC 202
G+ AR P P C NC + GH+ C
Sbjct: 299 GNTARVAVTYPRPPPKCLNCGRYGHLLSRC 328
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 23 QREKCFKCNRTGHFARDC 76
Q CF+C + GH+ DC
Sbjct: 7 QTGDCFRCRQAGHWINDC 24
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = +2
Query: 95 CYRCNGTGHIAREC---AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 247
C+RC GH +C + + D P C G RE+ + Y C
Sbjct: 11 CFRCRQAGHWINDCPLKSYTDDPPPAIQCPCGGGFCEIKVANTRENPGRKFYKC 64
>At5g01840.1 68418.m00103 ovate family protein 59% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 270
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -2
Query: 293 VLVPSGQLREMWPTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRA 126
VL+P L W + CS S + T PP + +R P TAR +V + A
Sbjct: 119 VLLPDESLTGSWHSPCSSKLSKTATFTPPPELELR--PIITKTAATARKTAVNSPA 172
>At4g28130.1 68417.m04033 diacylglycerol kinase accessory
domain-containing protein similar to diacylglycerol
kinase [Lycopersicon esculentum] GI:10798892; contains
Pfam profile PF00609: Diacylglycerol kinase accessory
domain (presumed)
Length = 466
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 268 GRCGRLVAVIAGLRRRLPPPLGTVP 194
G G L+ V++ L PPP+ TVP
Sbjct: 121 GTAGWLLGVVSDLNLSNPPPIATVP 145
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 95 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 205
C+RCNG+ + + + C CN+ G + CP
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENGLVP--CP 331
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 230 ASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCA 117
AS+TP P + G C C SVR + +CA
Sbjct: 701 ASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCA 738
>At1g72910.1 68414.m08433 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 380
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 357 QPPCLPYNQLCIL*CHARTISKGRHARHTITDYSTDAERRPRHR 488
Q C ++ C L + +TIS+GRH+ H ++ + +R ++
Sbjct: 227 QTSCQQFDSHCFL-GNVKTISQGRHSAHLHDEFLRNIKREDSNK 269
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIAR----NC 202
C C+ GH C C G G + P SC C TGHI + +C
Sbjct: 186 CDSCDGLGH---PSDAAMSICPTCRGVGRVTIP----PFTASCQTCKGTGHIIKEYCMSC 238
Query: 203 PEGGRESATQT 235
G T+T
Sbjct: 239 RGSGIVEGTKT 249
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 95 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 235
C C GTGHI +E S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Frame = +2
Query: 35 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIAR----NC 202
C C+ GH C C G G + P SC C TGHI + +C
Sbjct: 186 CDSCDGLGH---PSDAAMSICPTCRGVGRVTIP----PFTASCQTCKGTGHIIKEYCMSC 238
Query: 203 PEGGRESATQT 235
G T+T
Sbjct: 239 RGSGIVEGTKT 249
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 95 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 235
C C GTGHI +E S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,313,355
Number of Sequences: 28952
Number of extensions: 221440
Number of successful extensions: 1159
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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