Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0192
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    28   0.55 
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    27   1.7  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    25   5.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   8.9  

>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 154 NSVGC-GSETECPLFVEYERNGITRG 228
           NSVG   S T CPLF     NGIT G
Sbjct: 46  NSVGGEASSTACPLFTTIYTNGITPG 71


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 242 FWQ*LPRVIPFLSYSTNNGHSVSEP 168
           FW  LPR I F++    NG  + EP
Sbjct: 120 FWMFLPRPIHFVAADDENGLPIPEP 144


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 162 HRVTCFDYRIEINRRRSEDLDLIFS 88
           H +TCF+  IE+ R    D +L+ S
Sbjct: 58  HTITCFETGIEVARFTHHDHNLLLS 82


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 375 LPLNNFVPIPMTFGMLLKQPGFNIC 301
           LP++N VP   +FG+LL +     C
Sbjct: 162 LPVSNVVPGGYSFGLLLSEFSIESC 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,791
Number of Sequences: 5004
Number of extensions: 31389
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)