Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0192
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)                  28   2.9  
SB_9860| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   8.9  
SB_53428| Best HMM Match : Extensin_2 (HMM E-Value=2.4)                27   8.9  
SB_10934| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_38981| Best HMM Match : APS_kinase (HMM E-Value=0)
          Length = 578

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 124 VDFYSVIETRNSVGCGSETECPLFVEYERNGITRGNYCQN 243
           +DF S + +R  +GC ++        + RN I+  NY  N
Sbjct: 7   IDF-SALYSRRRIGCATKRIINCMTRFSRNPISHSNYVHN 45


>SB_9860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 337 RHAFETARI*YMRPLASASRTICTYSRLRPNNFGNN 230
           RH   T R  YM P+    R     SRLRP+  G +
Sbjct: 296 RHGVNTKRKSYMDPIRQPRRNSIDSSRLRPDGRGTD 331


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 165 THRVTCFD-YRIEINRRRSEDLD 100
           T+R  C D Y++E NRR  +DLD
Sbjct: 456 TYRCRCRDGYKLEPNRRTCQDLD 478


>SB_53428| Best HMM Match : Extensin_2 (HMM E-Value=2.4)
          Length = 448

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 283 SRTICTYSRLRPNNFGNNCRELFRFSHTQQIMGTPFPSRNPQSY 152
           SRT C+ +     NF N  RE F  S    + GT F +  P  +
Sbjct: 245 SRTACSRTVYMFANFANVVRESFANSVPMFVSGTVFATSGPDVF 288


>SB_10934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
 Frame = -2

Query: 412 RLIGDWQ---QPA*HFTSK*FCPNPYDIRHAFETARI*YMRPLASASRTICTYSRLRPNN 242
           RL+GDW+   Q    +  +   P  Y +R  ++  R    +     S  +   + L P  
Sbjct: 7   RLLGDWKINSQAVRVYEIRYAQPGSYGVRIDYKPKRSDQYKVYGMLSANMPNVT-LEPGE 65

Query: 241 FGNNCRELFRFSHTQQIMGTP 179
           F  NC +     H Q +MG P
Sbjct: 66  FVVNCHQDQMKHHWQDLMGFP 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,999,174
Number of Sequences: 59808
Number of extensions: 232256
Number of successful extensions: 423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)