Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0192
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003388-3|AAB54268.1|  220|Caenorhabditis elegans Hypothetical ...    31   0.37 
U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>AF003388-3|AAB54268.1|  220|Caenorhabditis elegans Hypothetical
           protein R10F2.5 protein.
          Length = 220

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -3

Query: 186 ALRFRAATHRVTCFDYRIEINRRRSEDLDLIFSLAP*VTLGHFATKTLPPTLQGHDWP 13
           AL        +   D R+ + + R ED +    +   + LG  A KTL    +GH  P
Sbjct: 8   ALYLNLGVEMMYVLDQRLRVQKERVEDREKSDKVVKEIMLGFLAKKTLDEVFKGHGTP 65


>U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical
           protein T20D4.9 protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 304 MRPLASASRTICTYSRLRPN-NFGNN 230
           M P AS S T   YSR+ PN +F NN
Sbjct: 17  MTPEASLSLTSQVYSRINPNISFSNN 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,583,308
Number of Sequences: 27780
Number of extensions: 179138
Number of successful extensions: 321
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)