Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0192
         (437 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   0.84 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   1.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   1.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   1.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.5  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   5.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.9  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 247 NNFGNNCREL-FRFSHTQQI-MGTPFP 173
           NN+ NNC++L +  ++ +QI +  P P
Sbjct: 103 NNYNNNCKKLYYNINYIEQIPVPVPVP 129


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 247 NNFGNNCREL-FRFSHTQQI 191
           NN+ NNC++L +  ++ +QI
Sbjct: 103 NNYNNNCKKLYYNINYIEQI 122


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 247 NNFGNNCREL-FRFSHTQQI 191
           NN+ NNC++L +  ++ +QI
Sbjct: 103 NNYNNNCKKLYYNINYIEQI 122


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -2

Query: 247 NNFGNNCREL-FRFSHTQQI 191
           NN+ NNC++L +  ++ +QI
Sbjct: 103 NNYNNNCKKLYYNINYIEQI 122


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 247 NNFGNNCRELF 215
           NN+ NNC++L+
Sbjct: 345 NNYNNNCKKLY 355


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 295 AAAYIKSGLFQKHAECHRDWDXXXXXXXXXXXXXSLLLIVP 417
           A+ Y+ S    KH+  HRD+              SL + +P
Sbjct: 18  ASTYVVSVAGYKHSRRHRDFTVAESYDASSSNSDSLSMTIP 58


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/19 (36%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 244 NFGNNCREL-FRFSHTQQI 191
           N+ NNC++L +  ++ +QI
Sbjct: 99  NYNNNCKKLYYNINYIEQI 117


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 384 AGCCQSPINRT 416
           A CC SP N T
Sbjct: 161 ASCCNSPENNT 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,748
Number of Sequences: 438
Number of extensions: 2192
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)