Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0192
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18300.1 68416.m02329 expressed protein ; expression supporte...    27   5.5  
At1g21430.1 68414.m02680 flavin-containing monooxygenase family ...    27   7.3  

>At3g18300.1 68416.m02329 expressed protein ; expression supported
           by MPSS
          Length = 274

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
 Frame = -2

Query: 274 ICTYSRL-RPNNFGN---NCRELFRF--SHTQQIMGTPFPSRNPQSYV 149
           IC++ RL R N+ G+   + RE+ R    H+ Q  G P P  NP S++
Sbjct: 170 ICSFPRLTRSNSTGSVAISKREMLRDINKHSSQRHGVPRPGVNPSSHM 217


>At1g21430.1 68414.m02680 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana
          Length = 391

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 196 QIMGTPFPSRNPQSYVFRLXXXXXXXXXRGFRFNIQPRTMSDVRPLRYKD 47
           Q+   PFPS  P ++V +L            RFN+ PR   +V+   +KD
Sbjct: 63  QLPHMPFPSNTP-TFVSKLGFINYLDEY-ATRFNVNPRYNRNVKSAYFKD 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,024,234
Number of Sequences: 28952
Number of extensions: 165739
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)