Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0190
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   142   2e-35
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   0.70 
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   2.1  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   3.7  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   6.5  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   8.6  
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    25   8.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  142 bits (345), Expect = 2e-35
 Identities = 64/98 (65%), Positives = 82/98 (83%)
 Frame = +1

Query: 208 KNRQTREHLLVFFTNQEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 387
           K +   E  L     +E++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 388 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGXWG 501
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRG WG
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWG 144



 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 25/36 (69%), Positives = 32/36 (88%)
 Frame = +2

Query: 149 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 257 NSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 367
           +SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 333 LFLYRHDLKNLIIQGRAEEEINDLEFLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 160
           L +Y   L+NL+ QG+A E +N ++ +          +  I  S  +RP   + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 242 SLPIKNSRSLISSSARP*MMRFLRSCLYRNK 334
           ++ +K SR+    S  P MMRF+  C++  K
Sbjct: 34  TIVLKRSRNAQGFSLEPIMMRFIELCVHLRK 64


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 187 RPSCSRRKNRQTREHLLVFFTNQEFEIIDFFLGPSLNDE 303
           R    +++NR+T +  LV  T       +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = +1

Query: 262 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVKCSKEVA- 432
           E    F G  +  E + ++P       G  TRF   V   D NG   I  G+  + E A 
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437

Query: 433 TAIRGAIILAKLSVLPV 483
            ++ G   L   S+L +
Sbjct: 438 VSVHGGNRLGANSLLDI 454


>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 438 GSGDFLAALHTQTNMTVVVANGNKCLETCA 349
           G+GD     H +T  T +V   +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,639
Number of Sequences: 5004
Number of extensions: 36080
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)