BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0190 (508 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_06_0386 + 33555682-33556344,33557138-33557299 142 1e-34 07_01_0756 + 5819367-5820038,5820847-5821005 137 4e-33 03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05 07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 41 5e-04 11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.1 05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 28 3.7 >03_06_0386 + 33555682-33556344,33557138-33557299 Length = 274 Score = 142 bits (344), Expect = 1e-34 Identities = 66/85 (77%), Positives = 76/85 (89%) Frame = +1 Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432 +E +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVA Sbjct: 73 KEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVA 131 Query: 433 TAIRGAIILAKLSVLPVRRGXWGNK 507 TAIRGAIILAKLSV+PVRRG WGNK Sbjct: 132 TAIRGAIILAKLSVVPVRRGYWGNK 156 Score = 57.6 bits (133), Expect = 5e-09 Identities = 22/36 (61%), Positives = 32/36 (88%) Frame = +2 Query: 149 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256 ++++++WVPVTKLGRLV+EG+ K+E IYL SLP+K Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73 >07_01_0756 + 5819367-5820038,5820847-5821005 Length = 276 Score = 137 bits (332), Expect = 4e-33 Identities = 64/85 (75%), Positives = 75/85 (88%) Frame = +1 Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432 +E +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVA Sbjct: 76 KEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVA 134 Query: 433 TAIRGAIILAKLSVLPVRRGXWGNK 507 TAIRGAIILAKLSV+PVRRG WGNK Sbjct: 135 TAIRGAIILAKLSVVPVRRGYWGNK 159 Score = 57.6 bits (133), Expect = 5e-09 Identities = 23/36 (63%), Positives = 32/36 (88%) Frame = +2 Query: 149 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256 ++++++WVPVTKLGRLV+E KI K+E IYL SLP+K Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76 >03_04_0238 - 19219040-19219218,19220296-19220350,19221606-19221690, 19222068-19222798 Length = 349 Score = 46.8 bits (106), Expect = 1e-05 Identities = 21/63 (33%), Positives = 39/63 (61%) Frame = +1 Query: 295 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 474 ++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++ Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230 Query: 475 LPV 483 + V Sbjct: 231 VTV 233 >07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 Length = 233 Score = 41.1 bits (92), Expect = 5e-04 Identities = 20/32 (62%), Positives = 24/32 (75%) Frame = +1 Query: 367 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 462 FV +GD + HI LGVKC+K AT + GAIILA Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31 >11_04_0439 + 17749634-17749858,17750164-17750301,17750770-17750943, 17751099-17751184,17751264-17751525,17751616-17751815, 17753631-17754086,17754198-17754474,17754694-17754828, 17754946-17755026,17756305-17756400,17756676-17756771, 17756844-17756900,17756975-17757043,17757158-17757237, 17758185-17758329,17758422-17758511,17758914-17758994, 17759103-17759198,17759279-17759335,17759417-17759461, 17759547-17759612,17760304-17760350,17762771-17762865, 17763375-17763393,17763438-17763498,17763637-17763660 Length = 1085 Score = 29.1 bits (62), Expect = 2.1 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -2 Query: 429 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 313 +F+A LHT +M V +E C LS F+ +HD Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693 >05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867, 8165938-8166012,8166674-8166846,8168697-8168795, 8169002-8169161,8169321-8169464,8169551-8169723, 8169796-8169991,8170061-8170258,8170864-8171016, 8171838-8171959,8172037-8172136,8172221-8172316, 8172400-8172530,8173717-8173819,8174373-8174555, 8174632-8174724,8174818-8174853,8175672-8175773, 8176310-8176472,8176557-8176678,8176994-8177158, 8177667-8177849,8178679-8178831,8179136-8179288, 8179373-8179444,8179530-8179664,8179739-8179800, 8179999-8180096,8180628-8180737,8180832-8181005, 8181092-8181157,8181847-8181915,8181989-8182099, 8182418-8182558,8182638-8182766,8182864-8183029, 8183174-8183388,8184883-8185089,8185501-8185572, 8185897-8186010,8186090-8186281,8186489-8186569, 8186654-8186728,8186812-8186878,8187292-8187452, 8187943-8188116,8188209-8188337,8188421-8188504, 8188589-8188650,8188728-8188800,8189008-8189142, 8189790-8189960,8190054-8190319,8190440-8190458 Length = 2448 Score = 28.3 bits (60), Expect = 3.7 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Frame = -3 Query: 281 RKKSMISNS*LVKKTSKCSR---VCRFFLREQDGRVW*QEPTLSGLPCRAHDHGRDXDRV 111 R++++++ + L+ C +C R D ++ L C AH G D Sbjct: 1006 RRRAIVTLTKLIPTVQLCITRLLICLSVARNNDDL---RKDAAEALCCLAHALGEDFTIF 1062 Query: 110 HEDRHGLYLHRVIRXRRENRHVHRLEQRPPLLNDGL 3 H L + +R R+ + +RL +R PL+++ L Sbjct: 1063 VSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENL 1098 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,106,540 Number of Sequences: 37544 Number of extensions: 263666 Number of successful extensions: 745 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 727 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 745 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1083123860 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -