Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0190
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   138   2e-33
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   7.8  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    27   7.8  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    27   7.8  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  138 bits (334), Expect = 2e-33
 Identities = 68/85 (80%), Positives = 75/85 (88%)
 Frame = +1

Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
           +EFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86  KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 433 TAIRGAIILAKLSVLPVRRGXWGNK 507
           TAIRGAI+ AKL+V+PVRRG WGNK
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNK 169



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +2

Query: 152 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
           E + EW PVTKLGRLV+E KI  LE IYL SLPIK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 372 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 286
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 372 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 286
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 154  RPERVGSCHQTRPSCSRRKNRQTREHLLVFFTNQEFEIIDFFLGPSLNDEVLKIMP 321
            RP R G    T+PS SRR  + T    +    + +F  I   LG +L    + ++P
Sbjct: 2145 RPHRAGKGTITKPSGSRRGAQMTVARTVSIPFSSDFSGIRMRLGTTLASTSVGVIP 2200


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 321 CTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 449
           CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 58  CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 321 CTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 449
           CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 58  CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,827,016
Number of Sequences: 27780
Number of extensions: 216666
Number of successful extensions: 585
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)