Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0190
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 156 9e-39
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 155 1e-38
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 155 2e-38
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 155 2e-38
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 155 2e-38
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 155 2e-38
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 6e-06
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 30 1.0
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.1
At3g63100.1 68416.m07087 glycine-rich protein 28 3.1
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 28 4.2
At3g01450.1 68416.m00069 expressed protein 28 4.2
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 156 bits (378), Expect = 9e-39
Identities = 69/85 (81%), Positives = 80/85 (94%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 433 TAIRGAIILAKLSVLPVRRGXWGNK 507
TAIRGAIILAKLSV+P+RRG WGNK
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNK 158
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 155 bits (377), Expect = 1e-38
Identities = 70/85 (82%), Positives = 79/85 (92%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 433 TAIRGAIILAKLSVLPVRRGXWGNK 507
TAIRGAIILAKLSV+PVRRG WGNK
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNK 167
Score = 50.8 bits (116), Expect = 5e-07
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++++WVPVTKLGRLV G I ++E IYL SLP+K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 155 bits (375), Expect = 2e-38
Identities = 70/85 (82%), Positives = 79/85 (92%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 433 TAIRGAIILAKLSVLPVRRGXWGNK 507
TAIRGAIILAKLSV+PVRRG WGNK
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 53.6 bits (123), Expect = 7e-08
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 155 bits (375), Expect = 2e-38
Identities = 70/85 (82%), Positives = 79/85 (92%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 433 TAIRGAIILAKLSVLPVRRGXWGNK 507
TAIRGAIILAKLSV+PVRRG WGNK
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 53.6 bits (123), Expect = 7e-08
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 155 bits (375), Expect = 2e-38
Identities = 70/85 (82%), Positives = 79/85 (92%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 433 TAIRGAIILAKLSVLPVRRGXWGNK 507
TAIRGAIILAKLSV+PVRRG WGNK
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 53.6 bits (123), Expect = 7e-08
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 155 bits (375), Expect = 2e-38
Identities = 70/85 (82%), Positives = 79/85 (92%)
Frame = +1
Query: 253 QEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 432
+E++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 433 TAIRGAIILAKLSVLPVRRGXWGNK 507
TAIRGAIILAKLSV+PVRRG WGNK
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 53.6 bits (123), Expect = 7e-08
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +2
Query: 155 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 256
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 6e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 298 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 477
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 478 PV 483
V
Sbjct: 209 QV 210
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.9 bits (64), Expect = 1.0
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -3
Query: 506 LLPQXPLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 327
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 326 CTGMILRTSSFR 291
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 364 AFVAIGDNNGHIGLGVKCSKE 426
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -3
Query: 146 RAHDHGRDXDRVHEDRHGLYLHRVIRXRRENRHVH 42
R H HGRD R H HG + HR R R H H
Sbjct: 111 RDHRHGRD--RGHHRGHGHHHHRGHRRGRGRGHGH 143
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 344 PARVCFCTGMILRTSSFRDGPRKKSMISNS*LVKKTSK 231
P R FC+G+ +S + PR+KS +S+ KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 506 LLPQXPLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 327
LL Q L++ + A + VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,257,794
Number of Sequences: 28952
Number of extensions: 204266
Number of successful extensions: 567
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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