Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0188
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 29 0.51
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.2
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.1
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 27 3.6
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.8
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 4.8
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa... 26 4.8
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 4.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 6.3
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 6.3
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 6.3
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 8.4
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 8.4
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 29.5 bits (63), Expect = 0.51
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 16 VYN*IQKMDLKITHVTSYANISTTERSNASEFVKKYETICICCLRQDVRLVSLSTCKHKS 195
VY K+D K N+ TT + F ++ TIC+C ++ L C H
Sbjct: 463 VYEKDWKLD-KSESFDGQGNVVTTAERGSKYFDQRECTICLCEYSEESPLYRELPCHHIF 521
Query: 196 FFECY-KIKLPNASVCCLC 249
C L N+ +C LC
Sbjct: 522 HPACIDPYLLKNSDLCPLC 540
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 133 CICCLRQDVRLVSLSTCKHKSF-FECYKIKLPNASVCCLC 249
C+ CL++D LS C H F + C + + C +C
Sbjct: 21 CVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPIC 60
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 43 LKITHVTSYANISTTERSNASEFVKKYETI-CICCLRQD-VRLVSL 174
+ + ++TS+ + ER AS + +++ + C+CC R D VR ++L
Sbjct: 762 IALYNLTSFVESLSKERRVASSTIDEFQKLLCLCCNRVDCVRQLAL 807
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 721 TIFNLAPFGRSHSNPHRRLRLSNTTTIPS*PLFFTFQYYFPLYTSPAHLR 572
TI NL P + H R+ N + + TF + YTS A+L+
Sbjct: 315 TIKNLIPVLQEMDKEHARIDFDNVDSRLDPNILTTFPFQVQFYTSNANLK 364
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 86 RNGVMHQNSLKNTKLYVFVV*DKMFV**VYRHVNTRVSLNVTR*SFL 226
RN V+ + ++ + LY+F+V ++FV + R + +V R SFL
Sbjct: 294 RNFVLENHLVRFSSLYIFIVLSQIFV--LLRQMRINSPSHVQRLSFL 338
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 369 TINIENTESKICKAENEDEIITENNVSQEFSTN 467
T ENT++ I +N+ I+T ++ + F+T+
Sbjct: 627 TEGFENTQTSITTNDNQSSILTSSDQTSPFATD 659
>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 26.2 bits (55), Expect = 4.8
Identities = 25/106 (23%), Positives = 44/106 (41%)
Frame = +3
Query: 258 LRKFQNFKNQTLRSFKILTEQVPVRNGTLRLQKTSIQTINIENTESKICKAENEDEIITE 437
LRK + +N+T S ++ + RN +Q + + N + E E T+
Sbjct: 18 LRKIKQLENKTRDSQEVQKNVIEHRNYDPEVQAPKMGFVEPPNMIESVEALSKEIEEKTK 77
Query: 438 NNVSQEFSTNPLKXXXXXXXXXXXXTTSTVRTLKSELSKSLEMENR 575
+ +E S+ P++ T R LK E +SLE +N+
Sbjct: 78 RKI-EEQSSVPVEELDLVTLRPKKPTWDLERDLK-ERMRSLETQNQ 121
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -3
Query: 674 STASVIQHD---HYPELALVFYFPVLFSPIHITSP 579
S A I++D Y + L+F F V+FSPI+ +P
Sbjct: 483 SEAEKIEYDCYNDYKDFVLMFGFLVMFSPIYPLAP 517
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +3
Query: 207 LQDKAS*CICLLSMSQLLRKFQNFKNQTLRSFKILTEQVPVRNGTLRLQKTSIQTINIEN 386
++D+A C C+ S + L F QTLR +V + N L ++ + + +N
Sbjct: 1 MRDRALPCKCMPSFFKTLHLTFVFSAQTLRIISPSISEVQLMNMALSFERQAFDGASSKN 60
Query: 387 TESKIC 404
C
Sbjct: 61 EYLTTC 66
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 693 VLTPTRIDGFGYPTRPLSRVSPCFLLSSIIFPYTHHQPI 577
++ PT + P+S++S C + I+ YTH QPI
Sbjct: 131 IIDPTDTNADNVGRYPVSKLS-CSTKNQILALYTHSQPI 168
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 248 VTVIEKVSKL*KSNTTKL*DSNGTGTSQEWNSSSSEN---LHSNDQYREYGKQN 400
V +I + + +T + +GTGTS + N S++N ++ D+Y E+ ++
Sbjct: 20 VKIIREEEAKDQESTDDIAVEDGTGTSPDLNFFSTQNVMQMNFEDEYSEFSNED 73
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 163 NEHLVLNNKYI*FRIF*RILMHYSVPLYLY*HMMLRG*FLNPFFVFNCIPSPIL 2
N +VL N Y IF +L+ + Y + ++ ++PFF+F CI IL
Sbjct: 703 NSEIVLGNNYFTTLIFSSLLI---LACYAFVSLIC----MDPFFIFTCIVQYIL 749
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 200 KKLLCLHVDRLTKRTSCLKQQIHIVSYFLTNSDALLRSVV 81
+ + C + R +K SCL+ + YF+ LLR VV
Sbjct: 472 RTITCWTLGRYSKWASCLESEEDRQKYFVPLLQGLLRMVV 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,343
Number of Sequences: 5004
Number of extensions: 60660
Number of successful extensions: 171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -