Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0188
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0085 - 689489-689935 31 0.71
08_02_0839 + 21693348-21694853 31 0.94
06_01_0476 - 3388176-3389267 31 1.2
02_05_1026 - 33598275-33599561 31 1.2
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 30 2.2
11_01_0084 - 640563-641000 30 2.2
08_02_1609 - 28213071-28213796 29 3.8
06_01_0611 + 4420873-4422207 29 5.0
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 28 6.6
02_02_0103 + 6797830-6798433,6799412-6799480,6799573-6799664,679... 28 6.6
07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632... 28 8.7
>12_01_0085 - 689489-689935
Length = 148
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 127 TICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
+IC+ L + R +L+ C+H+ EC L N + C LC
Sbjct: 75 SICLGELEEGERCCTLAACRHEFHKECIYRWLANRNTCPLC 115
>08_02_0839 + 21693348-21694853
Length = 501
Score = 31.1 bits (67), Expect = 0.94
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
+C+C D RL L C H +C L + S C LC
Sbjct: 155 VCLCEFADDDRLRLLPKCSHAFHVDCIDTWLLSHSTCPLC 194
>06_01_0476 - 3388176-3389267
Length = 363
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLCHS 255
+C+C D RL L C H +C L + S C LC +
Sbjct: 133 VCLCEFAGDDRLRLLPVCGHAFHIDCIDTWLLSNSTCPLCRA 174
>02_05_1026 - 33598275-33599561
Length = 428
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
+C+C D +L L C H EC L + S C LC
Sbjct: 125 VCLCEFAADDQLRLLPKCSHAFHLECIDTWLLSHSTCPLC 164
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 28 IQKMDLKITHVTSYANISTTERSNASEFVKKYETICICCLRQD 156
I D I + + + ST RSN SE +KK + +C+ RQ+
Sbjct: 421 IDSSDFGIPMIINQSATSTIPRSNGSEQLKKLKILCLHGFRQN 463
>11_01_0084 - 640563-641000
Length = 145
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 127 TICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
+IC+ L + R +L C+H+ EC L N + C LC
Sbjct: 73 SICLGELEEGERCCTLVACRHEFHKECIYRWLANHNTCPLC 113
>08_02_1609 - 28213071-28213796
Length = 241
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLCHSY 258
+C+ R+ RL L C H +C L A C LC ++
Sbjct: 98 VCLGEFREGERLRRLPPCLHSFHIDCIDAWLATALTCPLCRAH 140
>06_01_0611 + 4420873-4422207
Length = 444
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
+C+C D +L L TC H C L + S C +C
Sbjct: 125 VCLCEFAGDDKLRLLPTCGHAFHVPCIDAWLLSHSTCPIC 164
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 55 HVTSYANISTTERSNASEFVKKYETICICCLRQDVRLVSLST 180
H+ +YA TE S S + +I +CCLR R + LST
Sbjct: 820 HILNYAIKEPTEASEESAGYSQ-PSILLCCLRLVSRFMGLST 860
>02_02_0103 +
6797830-6798433,6799412-6799480,6799573-6799664,
6799968-6800002,6800306-6800470,6800561-6800657,
6800915-6801031
Length = 392
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 718 IFNLAPFGRS-HSNPHRRLRLSNTTTIPS 635
+F+L+P + H +PHRRLRL PS
Sbjct: 33 LFHLSPSSPTPHPHPHRRLRLRGARASPS 61
>07_03_1576 -
27862043-27862129,27862935-27862988,27863042-27863243,
27865015-27865249,27865338-27865404,27865489-27865639,
27866898-27866957,27867402-27867466
Length = 306
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/76 (22%), Positives = 29/76 (38%)
Frame = +1
Query: 22 N*IQKMDLKITHVTSYANISTTERSNASEFVKKYETICICCLRQDVRLVSLSTCKHKSFF 201
N ++ K + Y ++ SE E C C+ + ++V L TC H
Sbjct: 129 NEVEDKKQKAICIERYRRRDEDQKMVISEIDDNIEEECGICMEINGKVV-LPTCSHAMCI 187
Query: 202 ECYKIKLPNASVCCLC 249
+CY+ + C C
Sbjct: 188 KCYRDWRSRSQSCPFC 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,581
Number of Sequences: 37544
Number of extensions: 329342
Number of successful extensions: 839
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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