Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0188
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9248| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.18 
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_14792| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_46547| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_9248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
 Frame = +3

Query: 309 LTEQVPVRNGTLR-LQKTSIQTINIEN-TESKICKAENEDEIIT 434
           LT+ V VR+  +  + + S+Q+ NI N T+ ++CKA+ ED+I+T
Sbjct: 168 LTDFVQVRDHLITGIVRHSLQSGNIANMTQGELCKAKKEDDILT 211


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +3

Query: 273  NFKNQTLRSFKILTEQVPVRNGTLRLQKTSIQTINIENTESKICKAENEDEIITENNVSQ 452
            +  N ++RSF + TE +   N     + TS Q++    TE  IC  ++ ++    +N S 
Sbjct: 1638 SISNLSVRSFSLSTEDLKTNNNVHGPKGTSPQSVVSGFTERSICSEKSLEKQDYTSNTSH 1697

Query: 453  EFST 464
              ST
Sbjct: 1698 PTST 1701


>SB_14792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = -1

Query: 619 TFQYYFPLYTSPAHLRFSISNDFDSSLFKVLTVDV 515
           T   YF L TSP H R SIS  F  SL  +  + V
Sbjct: 141 TLDRYFAL-TSPLHYRHSISQSFPLSLLSIWVIPV 174


>SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 249 SQLLRKFQNFKNQTLRSFKILTEQVPVRNGT 341
           S++   F NFK  T+  F++L E++ + NGT
Sbjct: 193 SEIRTTFLNFKPSTIADFELLREKLSLLNGT 223


>SB_46547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1058

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 647  GRVG*PKPSMRVGVRTAKRS*VKNGLP 727
            G VG P P   VGVR  +   VK G+P
Sbjct: 987  GSVGAPMPGKVVGVRVKENEVVKKGMP 1013


>SB_7039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 577

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +1

Query: 130 ICICCLRQDVRLV--SLSTCKHKSFFECYK----IKLPNASVCCLCHSY*ESFKTLKIKH 291
           IC  C  Q  R +   +STC+H+S  EC +    I++  + V   C    E F    IK+
Sbjct: 78  ICPVCYAQRPRSLFPDISTCEHRSCIECLRQYMTIEINESRVNLTCPECSERFHPNDIKY 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,924,448
Number of Sequences: 59808
Number of extensions: 405939
Number of successful extensions: 1024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)