Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0188
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 33 0.15
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 31 0.59
At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) fa... 31 0.59
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 31 0.78
At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger) fa... 31 1.0
At3g47160.1 68416.m05120 expressed protein similar to MTD2 [Medi... 31 1.0
At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger) fa... 30 1.8
At4g24015.1 68417.m03451 zinc finger (RING-H2 type) protein-rela... 29 2.4
At2g17790.1 68415.m02062 vacuolar protein sorting-associated pro... 29 2.4
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ... 29 3.2
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 29 4.2
At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger) fa... 28 7.3
At5g02460.1 68418.m00173 Dof-type zinc finger domain-containing ... 28 7.3
At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger) fa... 28 7.3
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i... 28 7.3
At3g01360.1 68416.m00057 expressed protein contains Pfam profile... 28 7.3
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa... 28 7.3
At4g33160.1 68417.m04724 F-box family protein (FBX13) contains s... 27 9.6
At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger) fa... 27 9.6
At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger) fa... 27 9.6
At4g09100.1 68417.m01501 zinc finger (C3HC4-type RING finger) fa... 27 9.6
At3g01180.1 68416.m00023 glycogen synthase, putative similar to ... 27 9.6
At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger) fa... 27 9.6
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 43 LKITHVTSYANISTTERSNASEFVKKYETICICC---LRQDVRLVSLSTCKHKSFFECYK 213
++ T S + T+ +++S + K Y IC C L + LV+LS+C H +C +
Sbjct: 193 IRFTEDNSEEEETKTKSASSSSYDKSY--ICPSCKVTLTNTMSLVALSSCGHVFCKKCAE 250
Query: 214 IKLPNASVCCLC 249
+P VC +C
Sbjct: 251 KFMPVDKVCLVC 262
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 351 QKTSIQTINIENTESKICKAENEDEIITENNVSQEFSTN 467
Q Q+ NIEN E++ +E DE+ ENN ++ T+
Sbjct: 377 QSEETQSDNIENAENQSSSSEISDELTLENNACEQRETD 415
>At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 zinc finger
protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 369
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
+C+C +D +L L C H +C L + S C LC
Sbjct: 146 VCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLC 185
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLCHS 255
+C+C + +L L C H EC L + S C LC S
Sbjct: 128 VCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRS 169
>At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger)
family protein similar to SP:O54965 RING finger protein
13 {Mus musculus} RING zinc finger protein
Length = 234
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 124 ETICICCLRQDVR--LVSLSTCKHKSFFECYKIKLPNASVCCLC 249
+ +C+ C VR +++ C HK +C L N+ +CC+C
Sbjct: 185 DKMCMICHSDYVRGDKLTILPCTHKYHKDCISHWLQNSKLCCVC 228
>At3g47160.1 68416.m05120 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812; supporting cDNA
gi|25083983|gb|BT002136.1|
Length = 245
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/61 (27%), Positives = 25/61 (40%)
Frame = +1
Query: 67 YANISTTERSNASEFVKKYETICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCL 246
Y N TE+ SE + E C C+ + +V L C H +CY+ + C
Sbjct: 125 YRNKDETEKVKLSEIDIEREEECGICMEMN-NMVVLPNCTHSLCIKCYRDWHGRSESCPF 183
Query: 247 C 249
C
Sbjct: 184 C 184
>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 472
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLCHS 255
+C+C + +L L C H +C L + S C LC S
Sbjct: 136 VCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRS 177
>At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +1
Query: 67 YANISTTERSNASEFVKKYETICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCL 246
Y T++ SE + E C CL ++V L TC H CY+ + C
Sbjct: 124 YRKKDRTDKGKMSEIDLEREEECGICLEIRNKVV-LPTCNHSMCINCYRNWRARSQSCPF 182
Query: 247 C 249
C
Sbjct: 183 C 183
>At4g24015.1 68417.m03451 zinc finger (RING-H2 type) protein-related
low similarity to RING-H2 zinc finger protein ATL4
[Arabidopsis thaliana] GI:4928399
Length = 174
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 124 ETICICCLRQ---DVRLVSLSTCKHKSFFECYKIKLPNASVCCLCHS 255
+++C CL + LV + CKH +C + L + + C LC S
Sbjct: 102 DSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRS 148
>At2g17790.1 68415.m02062 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 830
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/86 (22%), Positives = 37/86 (43%)
Frame = +3
Query: 207 LQDKAS*CICLLSMSQLLRKFQNFKNQTLRSFKILTEQVPVRNGTLRLQKTSIQTINIEN 386
+QD +CL ++ Q N S +T + + N L + + I +E+
Sbjct: 721 IQDGERVLLCLKRALKIANSAQQVANTARGSTGSVTLFIEILNKYLYFYEKGVPQITVES 780
Query: 387 TESKICKAENEDEIITENNVSQEFST 464
ES I +NE+ + ++ + F+T
Sbjct: 781 VESLIKLIKNEESMPSDPSAESFFAT 806
>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
SP|Q42510 Pattern formation protein EMB30 (GNOM)
{Arabidopsis thaliana}; contains Pfam profile PF01369:
Sec7 domain
Length = 1375
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 228 CICLLSMSQLLRKFQNFKNQTLRSFKILTEQVPVRNGTLRLQKTSIQ 368
C C+L++ LRKF + + SF +L +V G L LQ+ +++
Sbjct: 327 CSCILNIYHFLRKFMRLQLEAFFSFVLL--RVTAFTGFLPLQEVALE 371
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLCHS 255
+C+ L++ + L CKH +C L S C +C +
Sbjct: 110 VCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRT 151
>At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLCHS 255
+C+C D L + C H +C + L S C LC +
Sbjct: 137 VCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRA 178
>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 641
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 TSYANISTTERSNASEFVKKYETICICCLR-QDVRLVSLSTCKHKSFFECYKIKLPNAS- 234
+S + +T S+ F K IC+ +R +D + + + C H F+C + + +
Sbjct: 48 SSSSRPGSTPSSSGLRFSKGRCAICLYEIRKEDGKAIFTAECSHSFHFDCITSNVKHGNR 107
Query: 235 VCCLCHS 255
+C LC +
Sbjct: 108 ICPLCRT 114
>At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 376
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
+C+C + +L L C H C L + S C LC
Sbjct: 145 VCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLC 184
>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 278
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 133 CICCLRQDVRLVSLSTCKHKSFFECYK 213
C CL Q +R L TC HK F C K
Sbjct: 22 CPICLGQFLRESYLDTCFHKFCFNCIK 48
>At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type(RING finger)
Length = 358
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = -2
Query: 597 YTHHQPIFDFPSPTIL-------IARSLKFSPSM*FLQSHRPRQRDHLSMDSY 460
Y HH P F P+ ++ AR L ++ FL SHR QR +++SY
Sbjct: 209 YHHHSPSFSLPAAHVVDGEVDSSAARGLPYAHP--FLFSHRSNQRSSPAINSY 259
>At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 zinc finger
protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 375
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 127 TICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLCHS 255
++C+ + + +L + C H +C + L N + C LC +
Sbjct: 139 SVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRT 181
>At5g02460.1 68418.m00173 Dof-type zinc finger domain-containing
protein zinc finger protein OBP3, Arabidopsis thaliana,
EMBL:AF155818
Length = 399
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 281 KSNTTKL*DSNGTGTSQEWNSSSSENLHSNDQYREYGKQN 400
++ TK G G++ NS S ++ SNDQY N
Sbjct: 146 RNKRTKNSSGGGGGSTSSGNSKSQDSATSNDQYHHRAMAN 185
>At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 172
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 67 YANISTTERSNASEFVKKYETICICCLRQDVRLVSLSTCKHKSFFECYK 213
Y T++ SE + E C CL ++V L TC H CY+
Sbjct: 124 YRKKDRTDKGKMSEIDLEREEECGICLEIRNKVV-LPTCNHSMCINCYR 171
>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
identical to Homeobox protein LUMINIDEPENDENS
(Swiss-Prot:Q38796) [Arabidopsis thaliana]
Length = 953
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 314 GTGTSQEWNSSSSENLHSNDQYRE 385
GTGTS W S S+N + + Q E
Sbjct: 865 GTGTSSSWRSQQSQNSYYSHQENE 888
>At3g01360.1 68416.m00057 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 319
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 330 RNGTLRLQKTSIQTIN--IENTESKICKAENEDEIITENNVSQEFSTN 467
+NG LR + + + +EN + ++ EDE+ E+NV++E N
Sbjct: 266 KNGYLRQDHSKYRPLGAELENLSTFTLDSDEEDEVREESNVAKEVGLN 313
>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 508
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 127 TICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
++C+ + + +L + CKH +C + L + + C LC
Sbjct: 101 SVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLC 141
>At4g33160.1 68417.m04724 F-box family protein (FBX13) contains
similarity to fimbriata GI:547307 from [Antirrhinum
majus]
Length = 417
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 234 CLLSMSQLLRKFQNFKNQTLRSFKILTEQVPVRN 335
C MS + +++++ +QT +SFK+ Q+P R+
Sbjct: 46 CFFRMSSVCKRWKS--SQTSKSFKLACSQIPTRD 77
>At4g10160.1 68417.m01662 zinc finger (C3HC4-type RING finger)
family protein zinc finger protein, Arabidopsis
thaliana, gb:L76926
Length = 225
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 127 TICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
++C+ + + +L + +C H EC + L + + C LC
Sbjct: 98 SVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLC 138
>At4g10150.1 68417.m01660 zinc finger (C3HC4-type RING finger)
family protein RING-H2 finger protein RHA1a, Arabidopsis
thaliana,AF078683
Length = 236
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 127 TICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
++C+ + + +L + +C H EC + L + + C LC
Sbjct: 112 SVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLC 152
>At4g09100.1 68417.m01501 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 132
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +1
Query: 124 ETICICCLRQ---DVRLVSLSTCKHKSFFECYKIKLPNASVCCLCHS 255
E C+ CL + D L + C H +C I L ++S C +C +
Sbjct: 82 ELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRA 128
>At3g01180.1 68416.m00023 glycogen synthase, putative similar to
glycogen synthase Q43847 from [Solanum tuberosum]
Length = 792
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 311 NGTGTSQEWNSSSSENLHSNDQYREYGKQNM 403
NG T QEWN LHS+D Y Y +N+
Sbjct: 555 NGIDT-QEWNPEFDTYLHSDD-YTNYSLENL 583
>At2g34990.1 68415.m04293 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 302
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 130 ICICCLRQDVRLVSLSTCKHKSFFECYKIKLPNASVCCLC 249
+CIC L + C H +C + L + S C LC
Sbjct: 98 VCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLC 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,817,637
Number of Sequences: 28952
Number of extensions: 293685
Number of successful extensions: 777
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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