Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0186
         (722 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q880J8 Cluster: Mutlidrug resistance protein, putative;...    34   3.1  
UniRef50_Q72V01 Cluster: Cytoplasmic membrane protein; n=7; cell...    33   7.1  
UniRef50_Q7RCL7 Cluster: Asparagine-rich protein; n=2; Plasmodiu...    33   7.1  
UniRef50_A0KU53 Cluster: Undecaprenol kinase., rRNA (Guanine-N(1...    33   9.4  

>UniRef50_Q880J8 Cluster: Mutlidrug resistance protein, putative;
           n=4; Pseudomonas|Rep: Mutlidrug resistance protein,
           putative - Pseudomonas syringae pv. tomato
          Length = 414

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = -2

Query: 178 LGSQAVVTDIFFAASYSSQPTPIYHLFVERFG 83
           LG  A  T  FFAAS  S PTP+YHL+ E +G
Sbjct: 24  LGFLAFTTLCFFAAS--STPTPLYHLYQEAWG 53


>UniRef50_Q72V01 Cluster: Cytoplasmic membrane protein; n=7; cellular
            organisms|Rep: Cytoplasmic membrane protein - Leptospira
            interrogans serogroup Icterohaemorrhagiae
            serovarcopenhageni
          Length = 2787

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = -2

Query: 208  LKFSAKALRALGSQAVVTDIFFAASYSSQPTPIYHLFVERFGLYLV 71
            LK   + LR+ GS   VT I++   Y+++PT +Y+L VE    Y+V
Sbjct: 2212 LKLKDQVLRSDGSWGTVTGIYY---YNTEPTKVYNLEVEDNHTYVV 2254


>UniRef50_Q7RCL7 Cluster: Asparagine-rich protein; n=2; Plasmodium
           (Vinckeia)|Rep: Asparagine-rich protein - Plasmodium
           yoelii yoelii
          Length = 391

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +3

Query: 528 FNYVYELGKYYFISSFDKKIPNRRN*IVKILLLKSSSAHPWANFSIGPLNF 680
           FN + + G  YF+   +KKI   ++  VK+LL K   AH W  F    LNF
Sbjct: 21  FNQIKKQGDNYFVEKDEKKI---KSFYVKLLLSKKKYAHFWEIFFHVLLNF 68


>UniRef50_A0KU53 Cluster: Undecaprenol kinase., rRNA
           (Guanine-N(1)-)-methyltransferase; n=8; Shewanella|Rep:
           Undecaprenol kinase., rRNA
           (Guanine-N(1)-)-methyltransferase - Shewanella sp.
           (strain ANA-3)
          Length = 1223

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 435 SPFTLKQLIFTCISNYQKTFKPITTETYLLYIYDGPNT 322
           +PFT  + +    +NY   FK    E Y++YI DG  T
Sbjct: 392 NPFTDPEALVVGTNNYNSPFKRCQNEAYIIYITDGEPT 429


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,480,041
Number of Sequences: 1657284
Number of extensions: 14003711
Number of successful extensions: 24536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24532
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)