Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0186
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    28   1.2  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.1  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.6  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   6.3  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   6.3  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   8.3  
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc...    25   8.3  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -2

Query: 193 KALRALGSQAVVTDIFFAASYSSQPTPIYHLFVERF 86
           +AL ALG+   V DI  AAS       I H   ERF
Sbjct: 661 RALMALGTLCTVPDIALAASQIYHAQSIVHGIAERF 696


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 474 QLTPFSLLFIPET-SPFT-LKQLIFTCISNYQKTFKP 370
           +L  F+L  I    S FT LKQ  +TC S Y K F+P
Sbjct: 289 ELLKFALKHIDSNDSLFTFLKQTCYTCDSPYAKVFQP 325


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 507 FSRCNSTYSHPQLT--PFSLLFIP 442
           F R NST+SHP+ T   FS  F P
Sbjct: 476 FERSNSTFSHPEPTRSDFSQAFTP 499


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 521 CTNSSLVVAIQLI-PIPN*PLF-RYYLYLKRPH 429
           CT+ SLV A+Q+I  I N  L  RY+ Y +  H
Sbjct: 323 CTSRSLVTALQVIRQIQNGDLLARYWKYFEESH 355


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 202 TLKKSHFKLTSCGGNYFRIEILLSFIYLIIMEDDCDLLTFSVWAIIYI*KVSLSRYWLEC 381
           +L  S F L+SC   + R  ILLS    + M     LL    + ++ +  +   + W+  
Sbjct: 158 SLFSSLFILSSCKKKWVRASILLSVACSVKMS---SLLYVPAYLVLLLQILGPKKTWMHI 214

Query: 382 FLII 393
           F+II
Sbjct: 215 FVII 218


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 549 GKYYFISSFDKKIPNRRN*IVKILLLKSSSAHPWANFSIGP 671
           G   FIS FDK  P   + +V  LL K +S     N  + P
Sbjct: 381 GSDAFISGFDKVTPASISKVVSSLLAKPASTVAVGNLDVLP 421


>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 211

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 422 RVNGDVSGINNNEKGVNWGWE*VELQR 502
           R  GD+ G+N ++    WG E V++ R
Sbjct: 94  RYYGDLQGLNKDDARKKWGAEQVQIWR 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,559
Number of Sequences: 5004
Number of extensions: 61868
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)