Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0186
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52202| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            28   8.8  
SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_52202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = -3

Query: 522 MYQFIFSRCNSTYSHPQLTPFSLLFIPETSPFTLKQLIFTCISNYQKTFKPITTETYLLY 343
           +Y   F+RC   Y +P    F  +F+P+     L  +   C   Y   F PI    +L  
Sbjct: 2   LYPVFFTRCFIGYFYPMFWMFYRVFLPD----VLSGIFTRCFIGY---FYPIFYRVFLPD 54

Query: 342 IYDGPNTKC 316
           +  G  T+C
Sbjct: 55  VLSGIFTRC 63


>SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 495 NSTYSHPQLTPFSLLFIPETSPFTL 421
           NS YS+PQ+TP SL   P+ +  +L
Sbjct: 511 NSLYSNPQITPTSLYSNPQVTRISL 535


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 142 QKKYRLPQPGCLVRGEP*LRTLKK 213
           ++KYR P PGC +   P  +T K+
Sbjct: 882 KRKYRTPSPGCFIDSPPQDKTSKR 905


>SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 142 QKKYRLPQPGCLVRGEP*LRTLKK 213
           ++KYR P PGC +   P  +T K+
Sbjct: 77  KRKYRTPSPGCFIDSPPQDKTSKR 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,277,251
Number of Sequences: 59808
Number of extensions: 405710
Number of successful extensions: 881
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)