Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0186
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   3.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.9  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 453 LFIPETSPFTLKQLIFTCISNYQKTFKPITTETYLLYIYDG 331
           L I E +P T K+L    +SNY +  +P+   T  L +  G
Sbjct: 25  LKIFEANPDT-KRLYDDLLSNYNRLIRPVMNNTETLTVQLG 64


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 615 FSLSNFFCLEFFYQMMK*NSTYLIHIH 535
           +S  NF CLE  + + +    YL H +
Sbjct: 226 YSTGNFTCLEVVFVLKRRLGYYLFHTY 252


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 44  QPIQRACVFYEIKSKSFDEKMINWRRLAAIT 136
           Q  Q  C       +SF E MIN  R  A T
Sbjct: 73  QLFQTPCELLNFPKRSFSENMINDHRQPAPT 103


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -3

Query: 621 IKFSLSNFFCLEFFYQMMK*NSTYLIHIH 535
           I++S  NF C++  + + +    +L H +
Sbjct: 193 IEYSTGNFTCIQIVFNLRRRLGYHLFHTY 221


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 513 IGTCLFNYVYELGKYYFISSFDKKIPNRRN*IVKIL-LLKSSSAHP 647
           +GTC       L +Y  +    K+I  R+N   KI   +K++  +P
Sbjct: 287 LGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENP 332


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 513 IGTCLFNYVYELGKYYFISSFDKKIPNRRN*IVKIL-LLKSSSAHP 647
           +GTC       L +Y  +    K+I  R+N   KI   +K++  +P
Sbjct: 287 LGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENP 332


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 513 IGTCLFNYVYELGKYYFISSFDKKIPNRRN*IVKIL-LLKSSSAHP 647
           +GTC       L +Y  +    K+I  R+N   KI   +K++  +P
Sbjct: 226 LGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKTARENP 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,340
Number of Sequences: 438
Number of extensions: 4745
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)