Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0186
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46860.1 68415.m05847 inorganic pyrophosphatase, putative [so...    29   4.1  
At2g03600.1 68415.m00320 hypothetical protein similar to SP|Q417...    28   5.5  
At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi...    27   9.5  

>At2g46860.1 68415.m05847 inorganic pyrophosphatase, putative
           [soluble] / pyrophosphate phospho-hydrolase, putative /
           PPase, putative strong similarity to SP|Q43187 Soluble
           inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate
           phospho- hydrolase) (PPase) {Solanum tuberosum};
           contains Pfam profile PF00719: inorganic pyrophosphatase
          Length = 216

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 567 SSFDKKIPNRRN*IVKILLLKSSSAHPWANFSIGP 671
           S   + +P     I+  L  +S +AHPW +  IGP
Sbjct: 13  SQSPRPVPKLNERILSTLSRRSVAAHPWHDLEIGP 47


>At2g03600.1 68415.m00320 hypothetical protein similar to SP|Q41706
           A3 protein (unknown function) {Vigna unguiculata}
          Length = 344

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 193 KALRALGSQAVV--TDIFFAASYSSQPTPIYHLFVERFGLYLVKNAGALYWLPQLRVP 26
           +A++  G   ++     FFA    +  T  ++  +  FG+ L+ N   LYW P L +P
Sbjct: 208 RAIKVFGKSTIIGLAITFFAVPKLNVYTAFFYFSISSFGVGLILNIIFLYW-PILGLP 264


>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
           to RAD54 GB:CAA71278 from [Drosophila melanogaster]
           (Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
          Length = 852

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 395 EIQVKISCFRVNGDVSGINNNEKG 466
           EI  K+SC R   D SG  N E+G
Sbjct: 658 EIHEKMSCSRCQNDASGTENIEEG 681


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,370,077
Number of Sequences: 28952
Number of extensions: 303790
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)