Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0184
(713 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D5779E Cluster: PREDICTED: similar to Host cell ... 50 6e-05
UniRef50_UPI0000DB6D81 Cluster: PREDICTED: similar to host cell ... 50 8e-05
UniRef50_Q16XE7 Cluster: Host cell factor C1; n=1; Aedes aegypti... 47 5e-04
UniRef50_UPI00015B4E73 Cluster: PREDICTED: hypothetical protein;... 46 7e-04
UniRef50_UPI0000E49860 Cluster: PREDICTED: similar to HCF; n=1; ... 35 2.3
UniRef50_Q7Q2R1 Cluster: ENSANGP00000003420; n=1; Anopheles gamb... 34 3.0
UniRef50_A6FVI8 Cluster: Surface repeat protein, putative; n=2; ... 33 5.3
UniRef50_P23608 Cluster: Poly-beta-hydroxybutyrate polymerase (E... 33 5.3
UniRef50_Q9V4C8 Cluster: Host cell factor (dHcf) [Contains: HCF ... 33 7.0
>UniRef50_UPI0000D5779E Cluster: PREDICTED: similar to Host cell
factor (HCF) (HCF-1) (C1 factor) (VP16 accessory
protein) (VCAF) (CFF); n=1; Tribolium castaneum|Rep:
PREDICTED: similar to Host cell factor (HCF) (HCF-1) (C1
factor) (VP16 accessory protein) (VCAF) (CFF) -
Tribolium castaneum
Length = 1170
Score = 50.0 bits (114), Expect = 6e-05
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 RQAAGNAGIPVIIKKTGAGAQASNTPQ-FVTLVKTSTGMTVATMPKVAMMNRSGAAVSQA 431
RQ + AG P+I++K + Q S Q VTLVKTSTGMT+AT+PK +G V
Sbjct: 472 RQTSQVAGKPLIVQKGSSIIQKSGVQQQVVTLVKTSTGMTLATLPK------AGNIVQNK 525
Query: 432 QNITPGATIVKLVSNTVGGNKIITLPLICCN 524
P TIVK++ + + T+ I N
Sbjct: 526 TPQQPKNTIVKIMPSNPSSKVLTTVKAIPSN 556
>UniRef50_UPI0000DB6D81 Cluster: PREDICTED: similar to host cell
factor C1; n=1; Apis mellifera|Rep: PREDICTED: similar
to host cell factor C1 - Apis mellifera
Length = 1550
Score = 49.6 bits (113), Expect = 8e-05
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +3
Query: 255 RQAAGNAGIPVIIKKTGAGAQASNTPQFVTLVKTSTGMTVATMPKVAMMNRSGAAVSQAQ 434
R A+ +I++K G S PQ V L+KT+ M VAT+PKV+++ + A+
Sbjct: 575 RTASPQQSKQIILQKPGQNI--SGQPQIVHLLKTAQAM-VATVPKVSLIPGKTVQATGAK 631
Query: 435 NITPGATIVKLVS-NTVGGNKIIT 503
+ GA I++LV+ NTV G+KI+T
Sbjct: 632 PLNQGAKILRLVNPNTVQGSKILT 655
>UniRef50_Q16XE7 Cluster: Host cell factor C1; n=1; Aedes
aegypti|Rep: Host cell factor C1 - Aedes aegypti
(Yellowfever mosquito)
Length = 1735
Score = 46.8 bits (106), Expect = 5e-04
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +3
Query: 300 TGAGAQASNTPQFVTLVKTSTGMTVATMPKVAMMNRSGAA--VSQAQNITPGATI---VK 464
TG A N PQ VTLVKTS GMTV T+PK+ ++ + A + Q Q I I
Sbjct: 746 TGTINNAVNQPQIVTLVKTSQGMTVQTLPKMNVLQKGTVAGTIQQPQQIVTSNIIGGGGT 805
Query: 465 LVSNTVGGNK 494
+ TVGG K
Sbjct: 806 IQQATVGGQK 815
>UniRef50_UPI00015B4E73 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 1589
Score = 46.4 bits (105), Expect = 7e-04
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +3
Query: 255 RQAAGNAGIPVIIKKTGAGAQASNTPQFVTLVKTSTGMTVATMPKVAMMNRSGAAVSQAQ 434
R A+ G +I++K G S PQ V LVKT G VA MPKV+++ + A+
Sbjct: 565 RAASPQQGKQIILQKPGQNI--SGQPQIVHLVKTQHGGMVA-MPKVSLVPGQKIPTTGAK 621
Query: 435 NITPGATIVKLVS-NTVGGNKIIT 503
+ G T ++LV+ N VGG+KI+T
Sbjct: 622 PLNQG-TFLRLVNPNAVGGSKILT 644
>UniRef50_UPI0000E49860 Cluster: PREDICTED: similar to HCF; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
HCF - Strongylocentrotus purpuratus
Length = 1216
Score = 34.7 bits (76), Expect = 2.3
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 360 TGMTVATMPKVAMMNRSGAAVSQAQNITPGATIVKLVSNTVGGNKIITL 506
+ M T V ++ +GA ++A + PG TIVKLVS T G K T+
Sbjct: 538 SAMVSGTTKTVTLVQNAGA--NKAGGVGPGTTIVKLVSTTQAGGKPTTI 584
>UniRef50_Q7Q2R1 Cluster: ENSANGP00000003420; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000003420 - Anopheles gambiae
str. PEST
Length = 1382
Score = 34.3 bits (75), Expect = 3.0
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +3
Query: 333 QFVTLVKTSTGMTVATMPKVAMMNR-SGAAVSQAQNIT--PGATIVK--LVSNTVGGNK 494
Q +TLVKTS G+T+ T+PK++++ + +G N+ G T+V+ V+ T G K
Sbjct: 643 QILTLVKTSQGVTMQTVPKMSVVQKTTGTQQIITSNLLAGTGGTVVQQATVAGTTSGQK 701
>UniRef50_A6FVI8 Cluster: Surface repeat protein, putative; n=2;
cellular organisms|Rep: Surface repeat protein, putative
- Roseobacter sp. AzwK-3b
Length = 5954
Score = 33.5 bits (73), Expect = 5.3
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 10 AGGMPLQGGVANLQTKVATGVPVKLGAGNIPVIXSSGGTIQIAGGTLA 153
AG + + GG++N ATG + G G++ V GG+I I G A
Sbjct: 1928 AGSIAI-GGISNETRAAATGTRLDAGTGDVSVSAGRGGSIDILSGAAA 1974
>UniRef50_P23608 Cluster: Poly-beta-hydroxybutyrate polymerase (EC
2.3.1.-) (Poly(3- hydroxybutyrate) polymerase) (PHB
polymerase) (PHB synthase) (Poly(3- hydroxyalkanoate)
polymerase); n=104; Bacteria|Rep:
Poly-beta-hydroxybutyrate polymerase (EC 2.3.1.-)
(Poly(3- hydroxybutyrate) polymerase) (PHB polymerase)
(PHB synthase) (Poly(3- hydroxyalkanoate) polymerase) -
Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 /
Stanier 337)(Cupriavidus necator (strain ATCC 17699 /
H16 / DSM 428 / Stanier337))
Length = 589
Score = 33.5 bits (73), Expect = 5.3
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 266 WQCWYSRH-HKENRCRCASK*YTAICYPCEDLNGHDCSNYAKSSNDEQV--WSSRFSST 433
W CWY RH + +N + K +C DL D Y S ++ + W++ ++ST
Sbjct: 436 WYCWYLRHTYLQNELKVPGK--LTVCGVPVDLASIDVPTYIYGSREDHIVPWTAAYAST 492
>UniRef50_Q9V4C8 Cluster: Host cell factor (dHcf) [Contains: HCF
N-terminal chain; HCF C- terminal chain]; n=4;
Sophophora|Rep: Host cell factor (dHcf) [Contains: HCF
N-terminal chain; HCF C- terminal chain] - Drosophila
melanogaster (Fruit fly)
Length = 1500
Score = 33.1 bits (72), Expect = 7.0
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 348 VKTSTGMTVATMPKVAMMNRSGAAVSQAQNITP--GATIVKLVSNTVGGNKIITLPLICC 521
VKTS GMTV T+PKV G P + I ++ +TV G++ I P++
Sbjct: 707 VKTSGGMTVQTLPKVNFTASKGTPPHGISIANPHLASGITQIQGSTVPGSQ-IQKPIVSG 765
Query: 522 N*VRLV 539
N ++LV
Sbjct: 766 NVLKLV 771
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,375,266
Number of Sequences: 1657284
Number of extensions: 12118912
Number of successful extensions: 31613
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31593
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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