Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0184
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.5  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    28   1.5  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   2.7  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    25   8.1  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.1  

>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 466 NFTIVAPG-VMFCA*ETAAPDLFIIATFGIVATVMPVEVFTRVTNC 332
           +F I+  G VMFC   +    LF  +T+  +A ++   + + VTNC
Sbjct: 549 HFLIITIGLVMFCKCFSEMSPLFACSTYSALAFILLQVISSYVTNC 594


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 403 FIIATFGIVATVMPVEVFTRVTNCGVLLACAPAPVFFMMT 284
           +I  TFG V++   +  F+    C  + AC   PVF++ T
Sbjct: 293 YIHETFGPVSSPYYIVRFSTEEECSAINACMGRPVFYVPT 332


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 412 PDLFIIATFGIVATVMPVEVFTRVTNCGVLLACA 311
           P +F+I    +   V PVE++   +N G +L  A
Sbjct: 267 PSIFVIGILNLPLKVSPVELYNEFSNHGHILGVA 300


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 414 AAVSQAQNITPGATIVKLVSNTVGGNKIITLPLICCN*VRLVLV 545
           +AVS+ +       I K++SN V  + I+ + LI C+  +L L+
Sbjct: 558 SAVSKGKRFGDSGYINKVISNEVVDHSIVFVTLIGCDSSKLELI 601


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 89 APSFTGTPVATFVCRFATPPCKGIPP 12
          APSFTG P +    +     C+  PP
Sbjct: 3  APSFTGLPTSMLSVKMICSECREDPP 28


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 83  SFTGTPVATFVCRFATPPC 27
           +FTG  + T +C+   PPC
Sbjct: 50  TFTGRQIYTSICKSRIPPC 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,333
Number of Sequences: 5004
Number of extensions: 46782
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)